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ZFAS1 (ZNFX1 antisense RNA 1)

Identity

Alias_namesC20orf199
NCRNA00275
ZNFX1-AS1
chromosome 20 open reading frame 199
non-protein coding RNA 275
ZNFX1 antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)HSUP1
HSUP2
Other alias
HGNC (Hugo) ZFAS1
LocusID (NCBI) 441951
Atlas_Id 52290
Location 20q13.13  [Link to chromosome band 20q13]
Location_base_pair Starts at 49278178 and ends at 49289258 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PQLC1 (18q23) / ZFAS1 (20q13.13)ZFAS1 (20q13.13) / CALD1 (7q33)ZFAS1 (20q13.13) / DDX47 (12p13.1)
ZFAS1 (20q13.13) / MAU2 (19p13.11)ZFAS1 (20q13.13) / RPS16 (19q13.2)ZFAS1 (20q13.13) / SRSF3 (6p21.31)
ZFAS1 (20q13.13) / TF (3q22.1)ZFAS1 (20q13.13) / ZFAS1 (20q13.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFAS1   33101
Cards
Entrez_Gene (NCBI)ZFAS1  441951  ZNFX1 antisense RNA 1
AliasesC20orf199; HSUP1; HSUP2; NCRNA00275; 
ZNFX1-AS1
GeneCards (Weizmann)ZFAS1
Ensembl hg19 (Hinxton)ENSG00000177410 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177410 [Gene_View]  chr20:49278178-49289258 [Contig_View]  ZFAS1 [Vega]
ICGC DataPortalENSG00000177410
TCGA cBioPortalZFAS1
AceView (NCBI)ZFAS1
Genatlas (Paris)ZFAS1
WikiGenes441951
SOURCE (Princeton)ZFAS1
Genetics Home Reference (NIH)ZFAS1
Genomic and cartography
GoldenPath hg38 (UCSC)ZFAS1  -     chr20:49278178-49289258 +  20q13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFAS1  -     20q13.13   [Description]    (hg19-Feb_2009)
EnsemblZFAS1 - 20q13.13 [CytoView hg19]  ZFAS1 - 20q13.13 [CytoView hg38]
Mapping of homologs : NCBIZFAS1 [Mapview hg19]  ZFAS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK124175 AY339614 AY513722 AY513723 BC032480
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFAS1
Cluster EST : UnigeneHs.356766 [ NCBI ]
CGAP (NCI)Hs.356766
Alternative Splicing GalleryENSG00000177410
Gene ExpressionZFAS1 [ NCBI-GEO ]   ZFAS1 [ EBI - ARRAY_EXPRESS ]   ZFAS1 [ SEEK ]   ZFAS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFAS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)441951
GTEX Portal (Tissue expression)ZFAS1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZFAS1
DMDM Disease mutations441951
Blocks (Seattle)ZFAS1
Human Protein AtlasENSG00000177410
IPIIPI00845257   IPI00741961   
Protein Interaction databases
FunCoupENSG00000177410
BioGRIDZFAS1
STRING (EMBL)ZFAS1
ZODIACZFAS1
Ontologies - Pathways
Huge Navigator ZFAS1 [HugePedia]
snp3D : Map Gene to Disease441951
BioCentury BCIQZFAS1
ClinGenZFAS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441951
Chemical/Pharm GKB GenePA165392434
Clinical trialZFAS1
Miscellaneous
canSAR (ICR)ZFAS1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFAS1
EVEXZFAS1
GoPubMedZFAS1
iHOPZFAS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:28 CEST 2017

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