Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZFC3H1 (zinc finger C3H1-type containing)

Identity

Alias_namesPSRC2
CCDC131
proline/serine-rich coiled-coil 2
coiled-coil domain containing 131
Alias_symbol (synonym)MGC23401
KIAA0546
CSRC2
Other alias
HGNC (Hugo) ZFC3H1
LocusID (NCBI) 196441
Atlas_Id 75928
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 71609601 and ends at 71663969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNX2 (5q23.2) / ZFC3H1 (12q21.1)TMEM121 (14q32.33) / ZFC3H1 (12q21.1)ZFC3H1 (12q21.1) / CDH4 (20q13.33)
ZFC3H1 (12q21.1) / MDM2 (12q15)ZFC3H1 (12q21.1) / USP3 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFC3H1   28328
Cards
Entrez_Gene (NCBI)ZFC3H1  196441  zinc finger C3H1-type containing
AliasesCCDC131; CSRC2; PSRC2
GeneCards (Weizmann)ZFC3H1
Ensembl hg19 (Hinxton)ENSG00000133858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133858 [Gene_View]  chr12:71609601-71663969 [Contig_View]  ZFC3H1 [Vega]
ICGC DataPortalENSG00000133858
TCGA cBioPortalZFC3H1
AceView (NCBI)ZFC3H1
Genatlas (Paris)ZFC3H1
WikiGenes196441
SOURCE (Princeton)ZFC3H1
Genetics Home Reference (NIH)ZFC3H1
Genomic and cartography
GoldenPath hg38 (UCSC)ZFC3H1  -     chr12:71609601-71663969 -  12q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFC3H1  -     12q21.1   [Description]    (hg19-Feb_2009)
EnsemblZFC3H1 - 12q21.1 [CytoView hg19]  ZFC3H1 - 12q21.1 [CytoView hg38]
Mapping of homologs : NCBIZFC3H1 [Mapview hg19]  ZFC3H1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB011118 AI015547 AK125035 BC015679 BC064336
RefSeq transcript (Entrez)NM_144982
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFC3H1
Cluster EST : UnigeneHs.527874 [ NCBI ]
CGAP (NCI)Hs.527874
Alternative Splicing GalleryENSG00000133858
Gene ExpressionZFC3H1 [ NCBI-GEO ]   ZFC3H1 [ EBI - ARRAY_EXPRESS ]   ZFC3H1 [ SEEK ]   ZFC3H1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFC3H1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196441
GTEX Portal (Tissue expression)ZFC3H1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60293   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60293  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60293
Splice isoforms : SwissVarO60293
PhosPhoSitePlusO60293
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)HAT    Putative_zinc-finger_domain    TPR-contain_dom    TPR-like_helical_dom   
Domain families : Pfam (Sanger)zf-C3H1 (PF10650)   
Domain families : Pfam (NCBI)pfam10650   
Domain families : Smart (EMBL)HAT (SM00386)  
Conserved Domain (NCBI)ZFC3H1
DMDM Disease mutations196441
Blocks (Seattle)ZFC3H1
SuperfamilyO60293
Human Protein AtlasENSG00000133858
Peptide AtlasO60293
HPRD14489
IPIIPI00743894   IPI00175146   IPI00059925   IPI01021390   
Protein Interaction databases
DIP (DOE-UCLA)O60293
IntAct (EBI)O60293
FunCoupENSG00000133858
BioGRIDZFC3H1
STRING (EMBL)ZFC3H1
ZODIACZFC3H1
Ontologies - Pathways
QuickGOO60293
Ontology : AmiGORNA binding  protein binding  extracellular space  RNA processing  metal ion binding  
Ontology : EGO-EBIRNA binding  protein binding  extracellular space  RNA processing  metal ion binding  
NDEx NetworkZFC3H1
Atlas of Cancer Signalling NetworkZFC3H1
Wikipedia pathwaysZFC3H1
Orthology - Evolution
OrthoDB196441
GeneTree (enSembl)ENSG00000133858
Phylogenetic Trees/Animal Genes : TreeFamZFC3H1
HOVERGENO60293
HOGENOMO60293
Homologs : HomoloGeneZFC3H1
Homology/Alignments : Family Browser (UCSC)ZFC3H1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFC3H1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFC3H1
dbVarZFC3H1
ClinVarZFC3H1
1000_GenomesZFC3H1 
Exome Variant ServerZFC3H1
ExAC (Exome Aggregation Consortium)ZFC3H1 (select the gene name)
Genetic variants : HAPMAP196441
Genomic Variants (DGV)ZFC3H1 [DGVbeta]
DECIPHERZFC3H1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFC3H1 
Mutations
ICGC Data PortalZFC3H1 
TCGA Data PortalZFC3H1 
Broad Tumor PortalZFC3H1
OASIS PortalZFC3H1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFC3H1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFC3H1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFC3H1
DgiDB (Drug Gene Interaction Database)ZFC3H1
DoCM (Curated mutations)ZFC3H1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFC3H1 (select a term)
intoGenZFC3H1
Cancer3DZFC3H1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFC3H1
Genetic Testing Registry ZFC3H1
NextProtO60293 [Medical]
TSGene196441
GENETestsZFC3H1
Huge Navigator ZFC3H1 [HugePedia]
snp3D : Map Gene to Disease196441
BioCentury BCIQZFC3H1
ClinGenZFC3H1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD196441
Chemical/Pharm GKB GenePA164727644
Clinical trialZFC3H1
Miscellaneous
canSAR (ICR)ZFC3H1 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFC3H1
EVEXZFC3H1
GoPubMedZFC3H1
iHOPZFC3H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:15 CEST 2017

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