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ZFC3H1 (zinc finger C3H1-type containing)

Identity

Alias (NCBI)CCDC131
CSRC2
PSRC2
HGNC (Hugo) ZFC3H1
HGNC Alias symbMGC23401
KIAA0546
CSRC2
HGNC Previous namePSRC2
 CCDC131
HGNC Previous nameproline/serine-rich coiled-coil 2
 coiled-coil domain containing 131
LocusID (NCBI) 196441
Atlas_Id 75928
Location 12q21.1  [Link to chromosome band 12q21]
Location_base_pair Starts at 71609601 and ends at 71663848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNX2 (5q23.2) / ZFC3H1 (12q21.1)TMEM121 (14q32.33) / ZFC3H1 (12q21.1)ZFC3H1 (12q21.1) / CDH4 (20q13.33)
ZFC3H1 (12q21.1) / MDM2 (12q15)ZFC3H1 (12q21.1) / USP3 (15q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZFC3H1   28328
Cards
Entrez_Gene (NCBI)ZFC3H1    zinc finger C3H1-type containing
AliasesCCDC131; CSRC2; PSRC2
GeneCards (Weizmann)ZFC3H1
Ensembl hg19 (Hinxton)ENSG00000133858 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133858 [Gene_View]  ENSG00000133858 [Sequence]  chr12:71609601-71663848 [Contig_View]  ZFC3H1 [Vega]
ICGC DataPortalENSG00000133858
TCGA cBioPortalZFC3H1
AceView (NCBI)ZFC3H1
Genatlas (Paris)ZFC3H1
SOURCE (Princeton)ZFC3H1
Genetics Home Reference (NIH)ZFC3H1
Genomic and cartography
GoldenPath hg38 (UCSC)ZFC3H1  -     chr12:71609601-71663848 -  12q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFC3H1  -     12q21.1   [Description]    (hg19-Feb_2009)
GoldenPathZFC3H1 - 12q21.1 [CytoView hg19]  ZFC3H1 - 12q21.1 [CytoView hg38]
ImmunoBaseENSG00000133858
Genome Data Viewer NCBIZFC3H1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB011118 AI015547 AK125035 BC015679 BC064336
RefSeq transcript (Entrez)NM_144982
Consensus coding sequences : CCDS (NCBI)ZFC3H1
Gene ExpressionZFC3H1 [ NCBI-GEO ]   ZFC3H1 [ EBI - ARRAY_EXPRESS ]   ZFC3H1 [ SEEK ]   ZFC3H1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFC3H1 [ Firebrowse - Broad ]
GenevisibleExpression of ZFC3H1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196441
GTEX Portal (Tissue expression)ZFC3H1
Human Protein AtlasENSG00000133858-ZFC3H1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60293   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60293  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60293
PhosPhoSitePlusO60293
Domaine pattern : Prosite (Expaxy)TPR_REGION (PS50293)   
Domains : Interpro (EBI)HAT    Putative_zinc-finger_domain    Red1    TPR-contain_dom    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)zf-C3H1 (PF10650)   
Domain families : Pfam (NCBI)pfam10650   
Domain families : Smart (EMBL)HAT (SM00386)  
Conserved Domain (NCBI)ZFC3H1
SuperfamilyO60293
AlphaFold pdb e-kbO60293   
Human Protein Atlas [tissue]ENSG00000133858-ZFC3H1 [tissue]
HPRD14489
Protein Interaction databases
DIP (DOE-UCLA)O60293
IntAct (EBI)O60293
BioGRIDZFC3H1
STRING (EMBL)ZFC3H1
ZODIACZFC3H1
Ontologies - Pathways
QuickGOO60293
Ontology : AmiGOexosome (RNase complex)  exosome (RNase complex)  protein binding  extracellular space  nucleus  nucleus  nucleolus  RNA processing  metal ion binding  
Ontology : EGO-EBIexosome (RNase complex)  exosome (RNase complex)  protein binding  extracellular space  nucleus  nucleus  nucleolus  RNA processing  metal ion binding  
NDEx NetworkZFC3H1
Atlas of Cancer Signalling NetworkZFC3H1
Wikipedia pathwaysZFC3H1
Orthology - Evolution
OrthoDB196441
GeneTree (enSembl)ENSG00000133858
Phylogenetic Trees/Animal Genes : TreeFamZFC3H1
Homologs : HomoloGeneZFC3H1
Homology/Alignments : Family Browser (UCSC)ZFC3H1
Gene fusions - Rearrangements
Fusion : QuiverZFC3H1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFC3H1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFC3H1
dbVarZFC3H1
ClinVarZFC3H1
MonarchZFC3H1
1000_GenomesZFC3H1 
Exome Variant ServerZFC3H1
GNOMAD BrowserENSG00000133858
Varsome BrowserZFC3H1
ACMGZFC3H1 variants
VarityO60293
Genomic Variants (DGV)ZFC3H1 [DGVbeta]
DECIPHERZFC3H1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFC3H1 
Mutations
ICGC Data PortalZFC3H1 
TCGA Data PortalZFC3H1 
Broad Tumor PortalZFC3H1
OASIS PortalZFC3H1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFC3H1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZFC3H1
Mutations and Diseases : HGMDZFC3H1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZFC3H1
DgiDB (Drug Gene Interaction Database)ZFC3H1
DoCM (Curated mutations)ZFC3H1
CIViC (Clinical Interpretations of Variants in Cancer)ZFC3H1
Cancer3DZFC3H1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZFC3H1
MedgenZFC3H1
Genetic Testing Registry ZFC3H1
NextProtO60293 [Medical]
GENETestsZFC3H1
Target ValidationZFC3H1
Huge Navigator ZFC3H1 [HugePedia]
ClinGenZFC3H1
Clinical trials, drugs, therapy
MyCancerGenomeZFC3H1
Protein Interactions : CTDZFC3H1
Pharm GKB GenePA164727644
PharosO60293
Clinical trialZFC3H1
Miscellaneous
canSAR (ICR)ZFC3H1
HarmonizomeZFC3H1
DataMed IndexZFC3H1
Probes
Litterature
PubMed42 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZFC3H1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:02 CEST 2021

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