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ZFP1 (ZFP1 zinc finger protein)

Identity

Alias_nameszinc finger protein 1 homolog (mouse)
zinc finger protein 1
Alias_symbol (synonym)FLJ34243
ZNF475
Other alias
HGNC (Hugo) ZFP1
LocusID (NCBI) 162239
Atlas_Id 75931
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 75148441 and ends at 75172234 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ROBO2 (3p12.3) / ZFP1 (16q23.1)ZFP1 (16q23.1) / NKTR (3p22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP1   23328
Cards
Entrez_Gene (NCBI)ZFP1  162239  ZFP1 zinc finger protein
AliasesZNF475
GeneCards (Weizmann)ZFP1
Ensembl hg19 (Hinxton)ENSG00000184517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184517 [Gene_View]  chr16:75148441-75172234 [Contig_View]  ZFP1 [Vega]
ICGC DataPortalENSG00000184517
TCGA cBioPortalZFP1
AceView (NCBI)ZFP1
Genatlas (Paris)ZFP1
WikiGenes162239
SOURCE (Princeton)ZFP1
Genetics Home Reference (NIH)ZFP1
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP1  -     chr16:75148441-75172234 +  16q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP1  -     16q23.1   [Description]    (hg19-Feb_2009)
EnsemblZFP1 - 16q23.1 [CytoView hg19]  ZFP1 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBIZFP1 [Mapview hg19]  ZFP1 [Mapview hg38]
OMIM617230   
Gene and transcription
Genbank (Entrez)AK091562 AK094761 AK291372 AK296560 AK308134
RefSeq transcript (Entrez)NM_001318469 NM_001318471 NM_001318472 NM_001318473 NM_001318474 NM_001318475 NM_001318476 NM_153688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP1
Cluster EST : UnigeneHs.388813 [ NCBI ]
CGAP (NCI)Hs.388813
Alternative Splicing GalleryENSG00000184517
Gene ExpressionZFP1 [ NCBI-GEO ]   ZFP1 [ EBI - ARRAY_EXPRESS ]   ZFP1 [ SEEK ]   ZFP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)162239
GTEX Portal (Tissue expression)ZFP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P2D0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P2D0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P2D0
Splice isoforms : SwissVarQ6P2D0
PhosPhoSitePlusQ6P2D0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-H2C2_2 (PF13465)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13465   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP1
DMDM Disease mutations162239
Blocks (Seattle)ZFP1
SuperfamilyQ6P2D0
Human Protein AtlasENSG00000184517
Peptide AtlasQ6P2D0
HPRD15724
IPIIPI00549292   IPI00465055   
Protein Interaction databases
DIP (DOE-UCLA)Q6P2D0
IntAct (EBI)Q6P2D0
FunCoupENSG00000184517
BioGRIDZFP1
STRING (EMBL)ZFP1
ZODIACZFP1
Ontologies - Pathways
QuickGOQ6P2D0
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP1
Atlas of Cancer Signalling NetworkZFP1
Wikipedia pathwaysZFP1
Orthology - Evolution
OrthoDB162239
GeneTree (enSembl)ENSG00000184517
Phylogenetic Trees/Animal Genes : TreeFamZFP1
HOVERGENQ6P2D0
HOGENOMQ6P2D0
Homologs : HomoloGeneZFP1
Homology/Alignments : Family Browser (UCSC)ZFP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP1
dbVarZFP1
ClinVarZFP1
1000_GenomesZFP1 
Exome Variant ServerZFP1
ExAC (Exome Aggregation Consortium)ZFP1 (select the gene name)
Genetic variants : HAPMAP162239
Genomic Variants (DGV)ZFP1 [DGVbeta]
DECIPHERZFP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP1 
Mutations
ICGC Data PortalZFP1 
TCGA Data PortalZFP1 
Broad Tumor PortalZFP1
OASIS PortalZFP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP1
DgiDB (Drug Gene Interaction Database)ZFP1
DoCM (Curated mutations)ZFP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP1 (select a term)
intoGenZFP1
Cancer3DZFP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617230   
Orphanet
MedgenZFP1
Genetic Testing Registry ZFP1
NextProtQ6P2D0 [Medical]
TSGene162239
GENETestsZFP1
Target ValidationZFP1
Huge Navigator ZFP1 [HugePedia]
snp3D : Map Gene to Disease162239
BioCentury BCIQZFP1
ClinGenZFP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD162239
Chemical/Pharm GKB GenePA134882678
Clinical trialZFP1
Miscellaneous
canSAR (ICR)ZFP1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP1
EVEXZFP1
GoPubMedZFP1
iHOPZFP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:16 CEST 2017

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