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ZFP28 (ZFP28 zinc finger protein)

Identity

Alias (NCBI)mkr5
HGNC (Hugo) ZFP28
HGNC Alias symbKIAA1431
mkr5
HGNC Previous namezinc finger protein 28 homolog (mouse)
LocusID (NCBI) 140612
Atlas_Id 51116
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56538948 and ends at 56556807 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SF1 (11q13.1) / ZFP28 (19q13.43)ZFP28 (19q13.43) / SLC9A8 (20q13.13)ZNF229 (19q13.31) / ZFP28 (19q13.43)
ZFP28 19q13.43 / SLC9A8 20q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZFP28   17801
Cards
Entrez_Gene (NCBI)ZFP28    ZFP28 zinc finger protein
Aliasesmkr5
GeneCards (Weizmann)ZFP28
Ensembl hg19 (Hinxton)ENSG00000196867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196867 [Gene_View]  ENSG00000196867 [Sequence]  chr19:56538948-56556807 [Contig_View]  ZFP28 [Vega]
ICGC DataPortalENSG00000196867
TCGA cBioPortalZFP28
AceView (NCBI)ZFP28
Genatlas (Paris)ZFP28
SOURCE (Princeton)ZFP28
Genetics Home Reference (NIH)ZFP28
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP28  -     chr19:56538948-56556807 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP28  -     19q13.43   [Description]    (hg19-Feb_2009)
GoldenPathZFP28 - 19q13.43 [CytoView hg19]  ZFP28 - 19q13.43 [CytoView hg38]
ImmunoBaseENSG00000196867
Genome Data Viewer NCBIZFP28 [Mapview hg19]  
OMIM616798   
Gene and transcription
Genbank (Entrez)AB037852 AF226995 AF507045 AK289583 BC028416
RefSeq transcript (Entrez)NM_001308440 NM_020828
Consensus coding sequences : CCDS (NCBI)ZFP28
Gene ExpressionZFP28 [ NCBI-GEO ]   ZFP28 [ EBI - ARRAY_EXPRESS ]   ZFP28 [ SEEK ]   ZFP28 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP28 [ Firebrowse - Broad ]
GenevisibleExpression of ZFP28 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140612
GTEX Portal (Tissue expression)ZFP28
Human Protein AtlasENSG00000196867-ZFP28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHY6
PhosPhoSitePlusQ8NHY6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP28
PDB (RSDB)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
PDB Europe2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
PDB (PDBSum)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
PDB (IMB)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
Structural Biology KnowledgeBase2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
SCOP (Structural Classification of Proteins)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
CATH (Classification of proteins structures)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
SuperfamilyQ8NHY6
AlphaFold pdb e-kbQ8NHY6   
Human Protein Atlas [tissue]ENSG00000196867-ZFP28 [tissue]
HPRD15725
Protein Interaction databases
DIP (DOE-UCLA)Q8NHY6
IntAct (EBI)Q8NHY6
BioGRIDZFP28
STRING (EMBL)ZFP28
ZODIACZFP28
Ontologies - Pathways
QuickGOQ8NHY6
Ontology : AmiGORNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
Ontology : EGO-EBIRNA polymerase II cis-regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  nucleus  regulation of transcription by RNA polymerase II  metal ion binding  
NDEx NetworkZFP28
Atlas of Cancer Signalling NetworkZFP28
Wikipedia pathwaysZFP28
Orthology - Evolution
OrthoDB140612
GeneTree (enSembl)ENSG00000196867
Phylogenetic Trees/Animal Genes : TreeFamZFP28
Homologs : HomoloGeneZFP28
Homology/Alignments : Family Browser (UCSC)ZFP28
Gene fusions - Rearrangements
Fusion : MitelmanZFP28/SLC9A8 [19q13.43/20q13.13]  
Fusion : QuiverZFP28
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP28
dbVarZFP28
ClinVarZFP28
MonarchZFP28
1000_GenomesZFP28 
Exome Variant ServerZFP28
GNOMAD BrowserENSG00000196867
Varsome BrowserZFP28
ACMGZFP28 variants
VarityQ8NHY6
Genomic Variants (DGV)ZFP28 [DGVbeta]
DECIPHERZFP28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP28 
Mutations
ICGC Data PortalZFP28 
TCGA Data PortalZFP28 
Broad Tumor PortalZFP28
OASIS PortalZFP28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP28  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZFP28
Mutations and Diseases : HGMDZFP28
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZFP28
DgiDB (Drug Gene Interaction Database)ZFP28
DoCM (Curated mutations)ZFP28
CIViC (Clinical Interpretations of Variants in Cancer)ZFP28
Cancer3DZFP28
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616798   
Orphanet
DisGeNETZFP28
MedgenZFP28
Genetic Testing Registry ZFP28
NextProtQ8NHY6 [Medical]
GENETestsZFP28
Target ValidationZFP28
Huge Navigator ZFP28 [HugePedia]
ClinGenZFP28
Clinical trials, drugs, therapy
MyCancerGenomeZFP28
Protein Interactions : CTDZFP28
Pharm GKB GenePA38469
PharosQ8NHY6
Clinical trialZFP28
Miscellaneous
canSAR (ICR)ZFP28
HarmonizomeZFP28
DataMed IndexZFP28
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZFP28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:38:57 CEST 2021

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