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ZFP28 (ZFP28 zinc finger protein)

Identity

Alias_nameszinc finger protein 28 homolog (mouse)
Alias_symbol (synonym)KIAA1431
mkr5
Other alias
HGNC (Hugo) ZFP28
LocusID (NCBI) 140612
Atlas_Id 51116
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56538948 and ends at 56553135 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SF1 (11q13.1) / ZFP28 (19q13.43)ZFP28 (19q13.43) / SLC9A8 (20q13.13)ZNF229 (19q13.31) / ZFP28 (19q13.43)
ZFP28 19q13.43 / SLC9A8 20q13.13

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP28   17801
Cards
Entrez_Gene (NCBI)ZFP28  140612  ZFP28 zinc finger protein
Aliasesmkr5
GeneCards (Weizmann)ZFP28
Ensembl hg19 (Hinxton)ENSG00000196867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196867 [Gene_View]  chr19:56538948-56553135 [Contig_View]  ZFP28 [Vega]
ICGC DataPortalENSG00000196867
TCGA cBioPortalZFP28
AceView (NCBI)ZFP28
Genatlas (Paris)ZFP28
WikiGenes140612
SOURCE (Princeton)ZFP28
Genetics Home Reference (NIH)ZFP28
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP28  -     chr19:56538948-56553135 +  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP28  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZFP28 - 19q13.43 [CytoView hg19]  ZFP28 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZFP28 [Mapview hg19]  ZFP28 [Mapview hg38]
OMIM616798   
Gene and transcription
Genbank (Entrez)AB037852 AF226995 AF507045 AK289583 BC028416
RefSeq transcript (Entrez)NM_001308440 NM_020828
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP28
Cluster EST : UnigeneHs.14794 [ NCBI ]
CGAP (NCI)Hs.14794
Alternative Splicing GalleryENSG00000196867
Gene ExpressionZFP28 [ NCBI-GEO ]   ZFP28 [ EBI - ARRAY_EXPRESS ]   ZFP28 [ SEEK ]   ZFP28 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140612
GTEX Portal (Tissue expression)ZFP28
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NHY6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NHY6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NHY6
Splice isoforms : SwissVarQ8NHY6
PhosPhoSitePlusQ8NHY6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP28
DMDM Disease mutations140612
Blocks (Seattle)ZFP28
PDB (SRS)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
PDB (PDBSum)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
PDB (IMB)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
PDB (RSDB)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
Structural Biology KnowledgeBase2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
SCOP (Structural Classification of Proteins)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
CATH (Classification of proteins structures)2EM2    2EM3    2EM4    2EMJ    2EMK    2EML    2EN9    2ENH    2EOH    2EP0    2EPX    2EPZ    2YTM   
SuperfamilyQ8NHY6
Human Protein AtlasENSG00000196867
Peptide AtlasQ8NHY6
HPRD15725
IPIIPI00019829   IPI00386443   IPI00647307   
Protein Interaction databases
DIP (DOE-UCLA)Q8NHY6
IntAct (EBI)Q8NHY6
FunCoupENSG00000196867
BioGRIDZFP28
STRING (EMBL)ZFP28
ZODIACZFP28
Ontologies - Pathways
QuickGOQ8NHY6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP28
Atlas of Cancer Signalling NetworkZFP28
Wikipedia pathwaysZFP28
Orthology - Evolution
OrthoDB140612
GeneTree (enSembl)ENSG00000196867
Phylogenetic Trees/Animal Genes : TreeFamZFP28
HOVERGENQ8NHY6
HOGENOMQ8NHY6
Homologs : HomoloGeneZFP28
Homology/Alignments : Family Browser (UCSC)ZFP28
Gene fusions - Rearrangements
Fusion : MitelmanZFP28/SLC9A8 [19q13.43/20q13.13]  
Fusion: TCGAZFP28 19q13.43 SLC9A8 20q13.13 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP28 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP28
dbVarZFP28
ClinVarZFP28
1000_GenomesZFP28 
Exome Variant ServerZFP28
ExAC (Exome Aggregation Consortium)ZFP28 (select the gene name)
Genetic variants : HAPMAP140612
Genomic Variants (DGV)ZFP28 [DGVbeta]
DECIPHERZFP28 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP28 
Mutations
ICGC Data PortalZFP28 
TCGA Data PortalZFP28 
Broad Tumor PortalZFP28
OASIS PortalZFP28 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP28  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP28
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP28
DgiDB (Drug Gene Interaction Database)ZFP28
DoCM (Curated mutations)ZFP28 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP28 (select a term)
intoGenZFP28
Cancer3DZFP28(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616798   
Orphanet
MedgenZFP28
Genetic Testing Registry ZFP28
NextProtQ8NHY6 [Medical]
TSGene140612
GENETestsZFP28
Huge Navigator ZFP28 [HugePedia]
snp3D : Map Gene to Disease140612
BioCentury BCIQZFP28
ClinGenZFP28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140612
Chemical/Pharm GKB GenePA38469
Clinical trialZFP28
Miscellaneous
canSAR (ICR)ZFP28 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP28
EVEXZFP28
GoPubMedZFP28
iHOPZFP28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:44:43 CEST 2017

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