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ZFP3 (ZFP3 zinc finger protein)

Identity

Alias_nameszinc finger protein homologous to Zfp-3 in mouse
zinc finger protein 3 homolog (mouse)
Alias_symbol (synonym)FLJ30726
ZNF752
Other alias
HGNC (Hugo) ZFP3
LocusID (NCBI) 124961
Atlas_Id 75934
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4981754 and ends at 4999669 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP3   12861
Cards
Entrez_Gene (NCBI)ZFP3  124961  ZFP3 zinc finger protein
AliasesZNF752
GeneCards (Weizmann)ZFP3
Ensembl hg19 (Hinxton)ENSG00000180787 [Gene_View]  chr17:4981754-4999669 [Contig_View]  ZFP3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180787 [Gene_View]  chr17:4981754-4999669 [Contig_View]  ZFP3 [Vega]
ICGC DataPortalENSG00000180787
TCGA cBioPortalZFP3
AceView (NCBI)ZFP3
Genatlas (Paris)ZFP3
WikiGenes124961
SOURCE (Princeton)ZFP3
Genetics Home Reference (NIH)ZFP3
Genomic and cartography
GoldenPath hg19 (UCSC)ZFP3  -     chr17:4981754-4999669 +  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZFP3  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblZFP3 - 17p13.2 [CytoView hg19]  ZFP3 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIZFP3 [Mapview hg19]  ZFP3 [Mapview hg38]
OMIM194480   
Gene and transcription
Genbank (Entrez)AK055288 AK125731 AK290549 BC142962 BC143073
RefSeq transcript (Entrez)NM_153018
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)ZFP3
Cluster EST : UnigeneHs.48832 [ NCBI ]
CGAP (NCI)Hs.48832
Alternative Splicing GalleryENSG00000180787
Gene ExpressionZFP3 [ NCBI-GEO ]   ZFP3 [ EBI - ARRAY_EXPRESS ]   ZFP3 [ SEEK ]   ZFP3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124961
GTEX Portal (Tissue expression)ZFP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NJ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NJ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NJ6
Splice isoforms : SwissVarQ96NJ6
PhosPhoSitePlusQ96NJ6
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP3
DMDM Disease mutations124961
Blocks (Seattle)ZFP3
SuperfamilyQ96NJ6
Human Protein AtlasENSG00000180787
Peptide AtlasQ96NJ6
HPRD08705
IPIIPI00064885   IPI00445609   
Protein Interaction databases
DIP (DOE-UCLA)Q96NJ6
IntAct (EBI)Q96NJ6
FunCoupENSG00000180787
BioGRIDZFP3
STRING (EMBL)ZFP3
ZODIACZFP3
Ontologies - Pathways
QuickGOQ96NJ6
Ontology : AmiGOmolecular_function  DNA binding  sequence-specific DNA binding transcription factor activity  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  sequence-specific DNA binding transcription factor activity  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  biological_process  metal ion binding  
NDEx NetworkZFP3
Atlas of Cancer Signalling NetworkZFP3
Wikipedia pathwaysZFP3
Orthology - Evolution
OrthoDB124961
GeneTree (enSembl)ENSG00000180787
Phylogenetic Trees/Animal Genes : TreeFamZFP3
HOVERGENQ96NJ6
HOGENOMQ96NJ6
Homologs : HomoloGeneZFP3
Homology/Alignments : Family Browser (UCSC)ZFP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP3
dbVarZFP3
ClinVarZFP3
1000_GenomesZFP3 
Exome Variant ServerZFP3
ExAC (Exome Aggregation Consortium)ZFP3 (select the gene name)
Genetic variants : HAPMAP124961
Genomic Variants (DGV)ZFP3 [DGVbeta]
DECIPHER (Syndromes)17:4981754-4999669  ENSG00000180787
CONAN: Copy Number AnalysisZFP3 
Mutations
ICGC Data PortalZFP3 
TCGA Data PortalZFP3 
Broad Tumor PortalZFP3
OASIS PortalZFP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP3
DgiDB (Drug Gene Interaction Database)ZFP3
DoCM (Curated mutations)ZFP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP3 (select a term)
intoGenZFP3
Cancer3DZFP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM194480   
Orphanet
MedgenZFP3
Genetic Testing Registry ZFP3
NextProtQ96NJ6 [Medical]
TSGene124961
GENETestsZFP3
Huge Navigator ZFP3 [HugePedia]
snp3D : Map Gene to Disease124961
BioCentury BCIQZFP3
ClinGenZFP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124961
Chemical/Pharm GKB GenePA37450
Clinical trialZFP3
Miscellaneous
canSAR (ICR)ZFP3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP3
EVEXZFP3
GoPubMedZFP3
iHOPZFP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:52:20 CET 2017

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