Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZFP37 (ZFP37 zinc finger protein)

Identity

Alias_nameszinc finger protein homologous to Zfp37 in mouse
zinc finger protein 37 homolog (mouse)
Alias_symbol (synonym)ZNF906
Other aliaszfp-37
HGNC (Hugo) ZFP37
LocusID (NCBI) 7539
Atlas_Id 54798
Location 9q32  [Link to chromosome band 9q32]
Location_base_pair Starts at 113041815 and ends at 113056791 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
UBR4 (1p36.13) / ZFP37 (9q32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;9)(p36;q32) UBR4/ZFP37


External links

Nomenclature
HGNC (Hugo)ZFP37   12863
Cards
Entrez_Gene (NCBI)ZFP37  7539  ZFP37 zinc finger protein
AliasesZNF906; zfp-37
GeneCards (Weizmann)ZFP37
Ensembl hg19 (Hinxton)ENSG00000136866 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000136866 [Gene_View]  ENSG00000136866 [Sequence]  chr9:113041815-113056791 [Contig_View]  ZFP37 [Vega]
ICGC DataPortalENSG00000136866
TCGA cBioPortalZFP37
AceView (NCBI)ZFP37
Genatlas (Paris)ZFP37
WikiGenes7539
SOURCE (Princeton)ZFP37
Genetics Home Reference (NIH)ZFP37
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP37  -     chr9:113041815-113056791 -  9q32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP37  -     9q32   [Description]    (hg19-Feb_2009)
EnsemblZFP37 - 9q32 [CytoView hg19]  ZFP37 - 9q32 [CytoView hg38]
Mapping of homologs : NCBIZFP37 [Mapview hg19]  ZFP37 [Mapview hg38]
OMIM602951   
Gene and transcription
Genbank (Entrez)AF022158 AI002852 AI005346 AK301275 BC126390
RefSeq transcript (Entrez)NM_001282515 NM_001282518 NM_003408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP37
Cluster EST : UnigeneHs.150406 [ NCBI ]
CGAP (NCI)Hs.150406
Alternative Splicing GalleryENSG00000136866
Gene ExpressionZFP37 [ NCBI-GEO ]   ZFP37 [ EBI - ARRAY_EXPRESS ]   ZFP37 [ SEEK ]   ZFP37 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP37 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7539
GTEX Portal (Tissue expression)ZFP37
Human Protein AtlasENSG00000136866-ZFP37 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y6Q3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y6Q3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y6Q3
Splice isoforms : SwissVarQ9Y6Q3
PhosPhoSitePlusQ9Y6Q3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP37
DMDM Disease mutations7539
Blocks (Seattle)ZFP37
SuperfamilyQ9Y6Q3
Human Protein Atlas [tissue]ENSG00000136866-ZFP37 [tissue]
Peptide AtlasQ9Y6Q3
HPRD04258
IPIIPI00216321   IPI00943583   IPI01026403   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y6Q3
IntAct (EBI)Q9Y6Q3
FunCoupENSG00000136866
BioGRIDZFP37
STRING (EMBL)ZFP37
ZODIACZFP37
Ontologies - Pathways
QuickGOQ9Y6Q3
Ontology : AmiGODNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  zinc ion binding  
Ontology : EGO-EBIDNA-binding transcription factor activity, RNA polymerase II-specific  DNA binding  DNA-binding transcription factor activity  nucleus  regulation of transcription, DNA-templated  regulation of transcription by RNA polymerase II  zinc ion binding  
NDEx NetworkZFP37
Atlas of Cancer Signalling NetworkZFP37
Wikipedia pathwaysZFP37
Orthology - Evolution
OrthoDB7539
GeneTree (enSembl)ENSG00000136866
Phylogenetic Trees/Animal Genes : TreeFamZFP37
HOGENOMQ9Y6Q3
Homologs : HomoloGeneZFP37
Homology/Alignments : Family Browser (UCSC)ZFP37
Gene fusions - Rearrangements
Fusion : MitelmanUBR4/ZFP37 [1p36.13/9q32]  [t(1;9)(p36;q32)]  
Fusion : QuiverZFP37
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP37 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP37
dbVarZFP37
ClinVarZFP37
1000_GenomesZFP37 
Exome Variant ServerZFP37
ExAC (Exome Aggregation Consortium)ENSG00000136866
GNOMAD BrowserENSG00000136866
Varsome BrowserZFP37
Genetic variants : HAPMAP7539
Genomic Variants (DGV)ZFP37 [DGVbeta]
DECIPHERZFP37 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP37 
Mutations
ICGC Data PortalZFP37 
TCGA Data PortalZFP37 
Broad Tumor PortalZFP37
OASIS PortalZFP37 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP37  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP37
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP37
DgiDB (Drug Gene Interaction Database)ZFP37
DoCM (Curated mutations)ZFP37 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP37 (select a term)
intoGenZFP37
Cancer3DZFP37(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602951   
Orphanet
DisGeNETZFP37
MedgenZFP37
Genetic Testing Registry ZFP37
NextProtQ9Y6Q3 [Medical]
TSGene7539
GENETestsZFP37
Target ValidationZFP37
Huge Navigator ZFP37 [HugePedia]
snp3D : Map Gene to Disease7539
BioCentury BCIQZFP37
ClinGenZFP37
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7539
Chemical/Pharm GKB GenePA37452
Clinical trialZFP37
Miscellaneous
canSAR (ICR)ZFP37 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP37
EVEXZFP37
GoPubMedZFP37
iHOPZFP37
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Dec 21 16:03:26 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.