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ZFP41 (ZFP41 zinc finger protein)

Identity

Alias_nameszinc finger protein 41 homolog (mouse)
Alias_symbol (synonym)FLJ38705
FLJ00028
ZNF753
Other aliaszfp-41
HGNC (Hugo) ZFP41
LocusID (NCBI) 286128
Atlas_Id 75936
Location 8q24.3  [Link to chromosome band 8q24]
Location_base_pair Starts at 143246821 and ends at 143253591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZFP41 (8q24.3) / ANGPT1 (8q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP41   26786
Cards
Entrez_Gene (NCBI)ZFP41  286128  ZFP41 zinc finger protein
AliasesZNF753; zfp-41
GeneCards (Weizmann)ZFP41
Ensembl hg19 (Hinxton)ENSG00000181638 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181638 [Gene_View]  chr8:143246821-143253591 [Contig_View]  ZFP41 [Vega]
ICGC DataPortalENSG00000181638
TCGA cBioPortalZFP41
AceView (NCBI)ZFP41
Genatlas (Paris)ZFP41
WikiGenes286128
SOURCE (Princeton)ZFP41
Genetics Home Reference (NIH)ZFP41
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP41  -     chr8:143246821-143253591 +  8q24.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP41  -     8q24.3   [Description]    (hg19-Feb_2009)
EnsemblZFP41 - 8q24.3 [CytoView hg19]  ZFP41 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIZFP41 [Mapview hg19]  ZFP41 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021976 AK024438 AK096024 AL831951 AW576245
RefSeq transcript (Entrez)NM_001271156 NM_173832
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP41
Cluster EST : UnigeneHs.668016 [ NCBI ]
CGAP (NCI)Hs.668016
Alternative Splicing GalleryENSG00000181638
Gene ExpressionZFP41 [ NCBI-GEO ]   ZFP41 [ EBI - ARRAY_EXPRESS ]   ZFP41 [ SEEK ]   ZFP41 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP41 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286128
GTEX Portal (Tissue expression)ZFP41
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N8Y5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N8Y5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N8Y5
Splice isoforms : SwissVarQ8N8Y5
PhosPhoSitePlusQ8N8Y5
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP41
DMDM Disease mutations286128
Blocks (Seattle)ZFP41
SuperfamilyQ8N8Y5
Human Protein AtlasENSG00000181638
Peptide AtlasQ8N8Y5
HPRD08244
IPIIPI00784280   IPI00956740   IPI00816582   
Protein Interaction databases
DIP (DOE-UCLA)Q8N8Y5
IntAct (EBI)Q8N8Y5
FunCoupENSG00000181638
BioGRIDZFP41
STRING (EMBL)ZFP41
ZODIACZFP41
Ontologies - Pathways
QuickGOQ8N8Y5
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  cell differentiation  metal ion binding  
NDEx NetworkZFP41
Atlas of Cancer Signalling NetworkZFP41
Wikipedia pathwaysZFP41
Orthology - Evolution
OrthoDB286128
GeneTree (enSembl)ENSG00000181638
Phylogenetic Trees/Animal Genes : TreeFamZFP41
HOVERGENQ8N8Y5
HOGENOMQ8N8Y5
Homologs : HomoloGeneZFP41
Homology/Alignments : Family Browser (UCSC)ZFP41
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP41 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP41
dbVarZFP41
ClinVarZFP41
1000_GenomesZFP41 
Exome Variant ServerZFP41
ExAC (Exome Aggregation Consortium)ZFP41 (select the gene name)
Genetic variants : HAPMAP286128
Genomic Variants (DGV)ZFP41 [DGVbeta]
DECIPHERZFP41 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP41 
Mutations
ICGC Data PortalZFP41 
TCGA Data PortalZFP41 
Broad Tumor PortalZFP41
OASIS PortalZFP41 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP41  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP41
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP41
DgiDB (Drug Gene Interaction Database)ZFP41
DoCM (Curated mutations)ZFP41 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP41 (select a term)
intoGenZFP41
Cancer3DZFP41(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFP41
Genetic Testing Registry ZFP41
NextProtQ8N8Y5 [Medical]
TSGene286128
GENETestsZFP41
Target ValidationZFP41
Huge Navigator ZFP41 [HugePedia]
snp3D : Map Gene to Disease286128
BioCentury BCIQZFP41
ClinGenZFP41
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286128
Chemical/Pharm GKB GenePA142670529
Clinical trialZFP41
Miscellaneous
canSAR (ICR)ZFP41 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP41
EVEXZFP41
GoPubMedZFP41
iHOPZFP41
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:43 CEST 2017

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