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ZFP62 (ZFP62 zinc finger protein)

Identity

Alias_nameszinc finger protein 62 homolog (mouse)
zinc finger protein 62
Alias_symbol (synonym)FLJ34231
ZET
ZNF755
Other alias
HGNC (Hugo) ZFP62
LocusID (NCBI) 643836
Atlas_Id 75938
Location 5q35.3  [Link to chromosome band 5q35]
Location_base_pair Starts at 180847611 and ends at 180861286 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP62   23241
Cards
Entrez_Gene (NCBI)ZFP62  643836  ZFP62 zinc finger protein
AliasesZET; ZNF755
GeneCards (Weizmann)ZFP62
Ensembl hg19 (Hinxton)ENSG00000196670 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196670 [Gene_View]  chr5:180847611-180861286 [Contig_View]  ZFP62 [Vega]
ICGC DataPortalENSG00000196670
TCGA cBioPortalZFP62
AceView (NCBI)ZFP62
Genatlas (Paris)ZFP62
WikiGenes643836
SOURCE (Princeton)ZFP62
Genetics Home Reference (NIH)ZFP62
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP62  -     chr5:180847611-180861286 -  5q35.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP62  -     5q35.3   [Description]    (hg19-Feb_2009)
EnsemblZFP62 - 5q35.3 [CytoView hg19]  ZFP62 - 5q35.3 [CytoView hg38]
Mapping of homologs : NCBIZFP62 [Mapview hg19]  ZFP62 [Mapview hg38]
OMIM610281   
Gene and transcription
Genbank (Entrez)AI269000 AI689837 AK002206 AK091376 AK091550
RefSeq transcript (Entrez)NM_001172638 NM_152283
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP62
Cluster EST : UnigeneHs.735373 [ NCBI ]
CGAP (NCI)Hs.735373
Alternative Splicing GalleryENSG00000196670
Gene ExpressionZFP62 [ NCBI-GEO ]   ZFP62 [ EBI - ARRAY_EXPRESS ]   ZFP62 [ SEEK ]   ZFP62 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP62 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)643836
GTEX Portal (Tissue expression)ZFP62
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NB50   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NB50  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NB50
Splice isoforms : SwissVarQ8NB50
PhosPhoSitePlusQ8NB50
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam00096    pfam13912   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP62
DMDM Disease mutations643836
Blocks (Seattle)ZFP62
SuperfamilyQ8NB50
Human Protein AtlasENSG00000196670
Peptide AtlasQ8NB50
IPIIPI00955961   IPI00410359   IPI00956190   IPI00872351   IPI00856024   IPI00967454   IPI00965429   IPI00968044   
Protein Interaction databases
DIP (DOE-UCLA)Q8NB50
IntAct (EBI)Q8NB50
FunCoupENSG00000196670
BioGRIDZFP62
STRING (EMBL)ZFP62
ZODIACZFP62
Ontologies - Pathways
QuickGOQ8NB50
Ontology : AmiGOnucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleic acid binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP62
Atlas of Cancer Signalling NetworkZFP62
Wikipedia pathwaysZFP62
Orthology - Evolution
OrthoDB643836
GeneTree (enSembl)ENSG00000196670
Phylogenetic Trees/Animal Genes : TreeFamZFP62
HOVERGENQ8NB50
HOGENOMQ8NB50
Homologs : HomoloGeneZFP62
Homology/Alignments : Family Browser (UCSC)ZFP62
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP62 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP62
dbVarZFP62
ClinVarZFP62
1000_GenomesZFP62 
Exome Variant ServerZFP62
ExAC (Exome Aggregation Consortium)ZFP62 (select the gene name)
Genetic variants : HAPMAP643836
Genomic Variants (DGV)ZFP62 [DGVbeta]
DECIPHERZFP62 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP62 
Mutations
ICGC Data PortalZFP62 
TCGA Data PortalZFP62 
Broad Tumor PortalZFP62
OASIS PortalZFP62 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP62  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP62
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP62
DgiDB (Drug Gene Interaction Database)ZFP62
DoCM (Curated mutations)ZFP62 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP62 (select a term)
intoGenZFP62
Cancer3DZFP62(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610281   
Orphanet
MedgenZFP62
Genetic Testing Registry ZFP62
NextProtQ8NB50 [Medical]
TSGene643836
GENETestsZFP62
Target ValidationZFP62
Huge Navigator ZFP62 [HugePedia]
snp3D : Map Gene to Disease643836
BioCentury BCIQZFP62
ClinGenZFP62
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD643836
Chemical/Pharm GKB GenePA134969387
Clinical trialZFP62
Miscellaneous
canSAR (ICR)ZFP62 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP62
EVEXZFP62
GoPubMedZFP62
iHOPZFP62
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:43 CEST 2017

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