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ZFP64 (ZFP64 zinc finger protein)

Identity

Alias_namesZNF338
zinc finger protein 338
zinc finger protein 64 homolog (mouse)
zinc finger protein 64
Alias_symbol (synonym)FLJ10734
dJ831D17.1
FLJ12628
dJ548G19.1
Other alias
HGNC (Hugo) ZFP64
LocusID (NCBI) 55734
Atlas_Id 54070
Location 20q13.2  [Link to chromosome band 20q13]
Location_base_pair Starts at 52084011 and ends at 52105484 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(20;21)(q13.2;q22.12) ZFP64/RUNX1


External links

Nomenclature
HGNC (Hugo)ZFP64   15940
Cards
Entrez_Gene (NCBI)ZFP64  55734  ZFP64 zinc finger protein
AliasesZNF338
GeneCards (Weizmann)ZFP64
Ensembl hg19 (Hinxton)ENSG00000020256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000020256 [Gene_View]  chr20:52084011-52105484 [Contig_View]  ZFP64 [Vega]
ICGC DataPortalENSG00000020256
TCGA cBioPortalZFP64
AceView (NCBI)ZFP64
Genatlas (Paris)ZFP64
WikiGenes55734
SOURCE (Princeton)ZFP64
Genetics Home Reference (NIH)ZFP64
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP64  -     chr20:52084011-52105484 -  20q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP64  -     20q13.2   [Description]    (hg19-Feb_2009)
EnsemblZFP64 - 20q13.2 [CytoView hg19]  ZFP64 - 20q13.2 [CytoView hg38]
Mapping of homologs : NCBIZFP64 [Mapview hg19]  ZFP64 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK001596 AK001744 AK022690 AK024671 AK090547
RefSeq transcript (Entrez)NM_001319146 NM_018197 NM_022088 NM_199426 NM_199427
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP64
Cluster EST : UnigeneHs.473082 [ NCBI ]
CGAP (NCI)Hs.473082
Alternative Splicing GalleryENSG00000020256
Gene ExpressionZFP64 [ NCBI-GEO ]   ZFP64 [ EBI - ARRAY_EXPRESS ]   ZFP64 [ SEEK ]   ZFP64 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP64 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55734
GTEX Portal (Tissue expression)ZFP64
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NTW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NTW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NTW7
Splice isoforms : SwissVarQ9NTW7
PhosPhoSitePlusQ9NTW7
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP64
DMDM Disease mutations55734
Blocks (Seattle)ZFP64
SuperfamilyQ9NTW7
Human Protein AtlasENSG00000020256
Peptide AtlasQ9NTW7
HPRD15728
IPIIPI00018906   IPI00254471   IPI00414782   IPI00005020   IPI00796082   IPI01009229   IPI00552721   IPI00646824   IPI00399311   IPI00796575   IPI00790555   
Protein Interaction databases
DIP (DOE-UCLA)Q9NTW7
IntAct (EBI)Q9NTW7
FunCoupENSG00000020256
BioGRIDZFP64
STRING (EMBL)ZFP64
ZODIACZFP64
Ontologies - Pathways
QuickGOQ9NTW7
Ontology : AmiGODNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP64
Atlas of Cancer Signalling NetworkZFP64
Wikipedia pathwaysZFP64
Orthology - Evolution
OrthoDB55734
GeneTree (enSembl)ENSG00000020256
Phylogenetic Trees/Animal Genes : TreeFamZFP64
HOVERGENQ9NTW7
HOGENOMQ9NTW7
Homologs : HomoloGeneZFP64
Homology/Alignments : Family Browser (UCSC)ZFP64
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP64 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP64
dbVarZFP64
ClinVarZFP64
1000_GenomesZFP64 
Exome Variant ServerZFP64
ExAC (Exome Aggregation Consortium)ZFP64 (select the gene name)
Genetic variants : HAPMAP55734
Genomic Variants (DGV)ZFP64 [DGVbeta]
DECIPHERZFP64 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP64 
Mutations
ICGC Data PortalZFP64 
TCGA Data PortalZFP64 
Broad Tumor PortalZFP64
OASIS PortalZFP64 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP64  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP64
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP64
DgiDB (Drug Gene Interaction Database)ZFP64
DoCM (Curated mutations)ZFP64 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP64 (select a term)
intoGenZFP64
Cancer3DZFP64(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFP64
Genetic Testing Registry ZFP64
NextProtQ9NTW7 [Medical]
TSGene55734
GENETestsZFP64
Target ValidationZFP64
Huge Navigator ZFP64 [HugePedia]
snp3D : Map Gene to Disease55734
BioCentury BCIQZFP64
ClinGenZFP64
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55734
Chemical/Pharm GKB GenePA38060
Clinical trialZFP64
Miscellaneous
canSAR (ICR)ZFP64 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP64
EVEXZFP64
GoPubMedZFP64
iHOPZFP64
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 19:38:57 CEST 2017

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