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ZFP69 (ZFP69 zinc finger protein)

Identity

Alias_namesZNF642
zinc finger protein 642
Alias_symbol (synonym)ZKSCAN23A
FLJ16030
ZFP69A
ZSCAN54A
Other alias
HGNC (Hugo) ZFP69
LocusID (NCBI) 339559
Atlas_Id 75939
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 40943302 and ends at 40962015 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP69   24708
Cards
Entrez_Gene (NCBI)ZFP69  339559  ZFP69 zinc finger protein
AliasesZFP69A; ZKSCAN23A; ZNF642; ZSCAN54A
GeneCards (Weizmann)ZFP69
Ensembl hg19 (Hinxton)ENSG00000187815 [Gene_View]  chr1:40943302-40962015 [Contig_View]  ZFP69 [Vega]
Ensembl hg38 (Hinxton)ENSG00000187815 [Gene_View]  chr1:40943302-40962015 [Contig_View]  ZFP69 [Vega]
ICGC DataPortalENSG00000187815
TCGA cBioPortalZFP69
AceView (NCBI)ZFP69
Genatlas (Paris)ZFP69
WikiGenes339559
SOURCE (Princeton)ZFP69
Genetics Home Reference (NIH)ZFP69
Genomic and cartography
GoldenPath hg19 (UCSC)ZFP69  -     chr1:40943302-40962015 +  1p34.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZFP69  -     1p34.2   [Description]    (hg38-Dec_2013)
EnsemblZFP69 - 1p34.2 [CytoView hg19]  ZFP69 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIZFP69 [Mapview hg19]  ZFP69 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122618 BC041873 BC078148 BC144174 BM677727
RefSeq transcript (Entrez)NM_198494
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ZFP69
Cluster EST : UnigeneHs.434385 [ NCBI ]
CGAP (NCI)Hs.434385
Alternative Splicing GalleryENSG00000187815
Gene ExpressionZFP69 [ NCBI-GEO ]   ZFP69 [ EBI - ARRAY_EXPRESS ]   ZFP69 [ SEEK ]   ZFP69 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP69 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339559
GTEX Portal (Tissue expression)ZFP69
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ49AA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ49AA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ49AA0
Splice isoforms : SwissVarQ49AA0
PhosPhoSitePlusQ49AA0
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP69
DMDM Disease mutations339559
Blocks (Seattle)ZFP69
SuperfamilyQ49AA0
Human Protein AtlasENSG00000187815
Peptide AtlasQ49AA0
HPRD15883
IPIIPI00394833   
Protein Interaction databases
DIP (DOE-UCLA)Q49AA0
IntAct (EBI)Q49AA0
FunCoupENSG00000187815
BioGRIDZFP69
STRING (EMBL)ZFP69
ZODIACZFP69
Ontologies - Pathways
QuickGOQ49AA0
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP69
Atlas of Cancer Signalling NetworkZFP69
Wikipedia pathwaysZFP69
Orthology - Evolution
OrthoDB339559
GeneTree (enSembl)ENSG00000187815
Phylogenetic Trees/Animal Genes : TreeFamZFP69
HOVERGENQ49AA0
HOGENOMQ49AA0
Homologs : HomoloGeneZFP69
Homology/Alignments : Family Browser (UCSC)ZFP69
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP69 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP69
dbVarZFP69
ClinVarZFP69
1000_GenomesZFP69 
Exome Variant ServerZFP69
ExAC (Exome Aggregation Consortium)ZFP69 (select the gene name)
Genetic variants : HAPMAP339559
Genomic Variants (DGV)ZFP69 [DGVbeta]
DECIPHER (Syndromes)1:40943302-40962015  ENSG00000187815
CONAN: Copy Number AnalysisZFP69 
Mutations
ICGC Data PortalZFP69 
TCGA Data PortalZFP69 
Broad Tumor PortalZFP69
OASIS PortalZFP69 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZFP69
BioMutasearch ZFP69
DgiDB (Drug Gene Interaction Database)ZFP69
DoCM (Curated mutations)ZFP69 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP69 (select a term)
intoGenZFP69
Cancer3DZFP69(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFP69
Genetic Testing Registry ZFP69
NextProtQ49AA0 [Medical]
TSGene339559
GENETestsZFP69
Huge Navigator ZFP69 [HugePedia]
snp3D : Map Gene to Disease339559
BioCentury BCIQZFP69
ClinGenZFP69
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339559
Chemical/Pharm GKB GenePA134917508
Clinical trialZFP69
Miscellaneous
canSAR (ICR)ZFP69 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP69
EVEXZFP69
GoPubMedZFP69
iHOPZFP69
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:21 CET 2017

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