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ZFP69B (ZFP69 zinc finger protein B)

Identity

Alias (NCBI)ZKSCAN23B
ZNF643
ZSCAN54B
HGNC (Hugo) ZFP69B
HGNC Alias symbZKSCAN23B
FLJ34293
ZSCAN54B
HGNC Previous nameZNF643
HGNC Previous namezinc finger protein 643
LocusID (NCBI) 65243
Atlas_Id 75940
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 40450476 and ends at 40463715 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL2L1 (20q11.21) / ZFP69B (1p34.2)NUFIP2 (17q11.2) / ZFP69B (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ZFP69B   28053
Cards
Entrez_Gene (NCBI)ZFP69B    ZFP69 zinc finger protein B
AliasesZKSCAN23B; ZNF643; ZSCAN54B
GeneCards (Weizmann)ZFP69B
Ensembl hg19 (Hinxton)ENSG00000187801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187801 [Gene_View]  ENSG00000187801 [Sequence]  chr1:40450476-40463715 [Contig_View]  ZFP69B [Vega]
ICGC DataPortalENSG00000187801
TCGA cBioPortalZFP69B
AceView (NCBI)ZFP69B
Genatlas (Paris)ZFP69B
SOURCE (Princeton)ZFP69B
Genetics Home Reference (NIH)ZFP69B
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP69B  -     chr1:40450476-40463715 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP69B  -     1p34.2   [Description]    (hg19-Feb_2009)
GoldenPathZFP69B - 1p34.2 [CytoView hg19]  ZFP69B - 1p34.2 [CytoView hg38]
ImmunoBaseENSG00000187801
Genome Data Viewer NCBIZFP69B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK091612 AK094134 AL137241 BC017498 CN256362
RefSeq transcript (Entrez)NM_001369565 NM_023070
Consensus coding sequences : CCDS (NCBI)ZFP69B
Gene ExpressionZFP69B [ NCBI-GEO ]   ZFP69B [ EBI - ARRAY_EXPRESS ]   ZFP69B [ SEEK ]   ZFP69B [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP69B [ Firebrowse - Broad ]
GenevisibleExpression of ZFP69B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65243
GTEX Portal (Tissue expression)ZFP69B
Human Protein AtlasENSG00000187801-ZFP69B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJL9
PhosPhoSitePlusQ9UJL9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    SCAN_dom    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP69B
SuperfamilyQ9UJL9
AlphaFold pdb e-kbQ9UJL9   
Human Protein Atlas [tissue]ENSG00000187801-ZFP69B [tissue]
HPRD15884
Protein Interaction databases
DIP (DOE-UCLA)Q9UJL9
IntAct (EBI)Q9UJL9
BioGRIDZFP69B
STRING (EMBL)ZFP69B
ZODIACZFP69B
Ontologies - Pathways
QuickGOQ9UJL9
Ontology : AmiGOnegative regulation of transcription by RNA polymerase II  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  protein binding  nucleus  nucleolus  regulation of transcription by RNA polymerase II  Golgi organization  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription by RNA polymerase II  RNA polymerase II transcription regulatory region sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription repressor activity, RNA polymerase II-specific  protein binding  nucleus  nucleolus  regulation of transcription by RNA polymerase II  Golgi organization  metal ion binding  
NDEx NetworkZFP69B
Atlas of Cancer Signalling NetworkZFP69B
Wikipedia pathwaysZFP69B
Orthology - Evolution
OrthoDB65243
GeneTree (enSembl)ENSG00000187801
Phylogenetic Trees/Animal Genes : TreeFamZFP69B
Homologs : HomoloGeneZFP69B
Homology/Alignments : Family Browser (UCSC)ZFP69B
Gene fusions - Rearrangements
Fusion : QuiverZFP69B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP69B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP69B
dbVarZFP69B
ClinVarZFP69B
MonarchZFP69B
1000_GenomesZFP69B 
Exome Variant ServerZFP69B
GNOMAD BrowserENSG00000187801
Varsome BrowserZFP69B
ACMGZFP69B variants
VarityQ9UJL9
Genomic Variants (DGV)ZFP69B [DGVbeta]
DECIPHERZFP69B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP69B 
Mutations
ICGC Data PortalZFP69B 
TCGA Data PortalZFP69B 
Broad Tumor PortalZFP69B
OASIS PortalZFP69B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP69B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DZFP69B
Mutations and Diseases : HGMDZFP69B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaZFP69B
DgiDB (Drug Gene Interaction Database)ZFP69B
DoCM (Curated mutations)ZFP69B
CIViC (Clinical Interpretations of Variants in Cancer)ZFP69B
Cancer3DZFP69B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZFP69B
MedgenZFP69B
Genetic Testing Registry ZFP69B
NextProtQ9UJL9 [Medical]
GENETestsZFP69B
Target ValidationZFP69B
Huge Navigator ZFP69B [HugePedia]
ClinGenZFP69B
Clinical trials, drugs, therapy
MyCancerGenomeZFP69B
Protein Interactions : CTDZFP69B
Pharm GKB GenePA134991949
PharosQ9UJL9
Clinical trialZFP69B
Miscellaneous
canSAR (ICR)ZFP69B
HarmonizomeZFP69B
DataMed IndexZFP69B
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZFP69B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 16:29:04 CEST 2021

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