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ZFP69B (ZFP69 zinc finger protein B)

Identity

Alias_namesZNF643
zinc finger protein 643
Alias_symbol (synonym)ZKSCAN23B
FLJ34293
ZSCAN54B
Other alias
HGNC (Hugo) ZFP69B
LocusID (NCBI) 65243
Atlas_Id 75940
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 40450665 and ends at 40463718 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCL2L1 (20q11.21) / ZFP69B (1p34.2)NUFIP2 (17q11.2) / ZFP69B (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP69B   28053
Cards
Entrez_Gene (NCBI)ZFP69B  65243  ZFP69 zinc finger protein B
AliasesZKSCAN23B; ZNF643; ZSCAN54B
GeneCards (Weizmann)ZFP69B
Ensembl hg19 (Hinxton)ENSG00000187801 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187801 [Gene_View]  chr1:40450665-40463718 [Contig_View]  ZFP69B [Vega]
ICGC DataPortalENSG00000187801
TCGA cBioPortalZFP69B
AceView (NCBI)ZFP69B
Genatlas (Paris)ZFP69B
WikiGenes65243
SOURCE (Princeton)ZFP69B
Genetics Home Reference (NIH)ZFP69B
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP69B  -     chr1:40450665-40463718 +  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP69B  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblZFP69B - 1p34.2 [CytoView hg19]  ZFP69B - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIZFP69B [Mapview hg19]  ZFP69B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091612 AK094134 AL137241 BC017498 CN256362
RefSeq transcript (Entrez)NM_023070
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP69B
Cluster EST : UnigeneHs.633186 [ NCBI ]
CGAP (NCI)Hs.633186
Alternative Splicing GalleryENSG00000187801
Gene ExpressionZFP69B [ NCBI-GEO ]   ZFP69B [ EBI - ARRAY_EXPRESS ]   ZFP69B [ SEEK ]   ZFP69B [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP69B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)65243
GTEX Portal (Tissue expression)ZFP69B
Human Protein AtlasENSG00000187801-ZFP69B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJL9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJL9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJL9
Splice isoforms : SwissVarQ9UJL9
PhosPhoSitePlusQ9UJL9
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP69B
DMDM Disease mutations65243
Blocks (Seattle)ZFP69B
SuperfamilyQ9UJL9
Human Protein Atlas [tissue]ENSG00000187801-ZFP69B [tissue]
Peptide AtlasQ9UJL9
HPRD15884
IPIIPI00974293   IPI01021072   IPI00903200   IPI00977792   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJL9
IntAct (EBI)Q9UJL9
FunCoupENSG00000187801
BioGRIDZFP69B
STRING (EMBL)ZFP69B
ZODIACZFP69B
Ontologies - Pathways
QuickGOQ9UJL9
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP69B
Atlas of Cancer Signalling NetworkZFP69B
Wikipedia pathwaysZFP69B
Orthology - Evolution
OrthoDB65243
GeneTree (enSembl)ENSG00000187801
Phylogenetic Trees/Animal Genes : TreeFamZFP69B
HOVERGENQ9UJL9
HOGENOMQ9UJL9
Homologs : HomoloGeneZFP69B
Homology/Alignments : Family Browser (UCSC)ZFP69B
Gene fusions - Rearrangements
Tumor Fusion PortalZFP69B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP69B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP69B
dbVarZFP69B
ClinVarZFP69B
1000_GenomesZFP69B 
Exome Variant ServerZFP69B
ExAC (Exome Aggregation Consortium)ENSG00000187801
GNOMAD BrowserENSG00000187801
Genetic variants : HAPMAP65243
Genomic Variants (DGV)ZFP69B [DGVbeta]
DECIPHERZFP69B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP69B 
Mutations
ICGC Data PortalZFP69B 
TCGA Data PortalZFP69B 
Broad Tumor PortalZFP69B
OASIS PortalZFP69B [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZFP69B
BioMutasearch ZFP69B
DgiDB (Drug Gene Interaction Database)ZFP69B
DoCM (Curated mutations)ZFP69B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP69B (select a term)
intoGenZFP69B
Cancer3DZFP69B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZFP69B
MedgenZFP69B
Genetic Testing Registry ZFP69B
NextProtQ9UJL9 [Medical]
TSGene65243
GENETestsZFP69B
Target ValidationZFP69B
Huge Navigator ZFP69B [HugePedia]
snp3D : Map Gene to Disease65243
BioCentury BCIQZFP69B
ClinGenZFP69B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD65243
Chemical/Pharm GKB GenePA134991949
Clinical trialZFP69B
Miscellaneous
canSAR (ICR)ZFP69B (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP69B
EVEXZFP69B
GoPubMedZFP69B
iHOPZFP69B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:22:25 CET 2017

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