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ZFP82 (ZFP82 zinc finger protein)

Identity

Alias_namesZNF545
zinc finger protein 545
zinc finger protein 82 homolog (mouse)
zinc finger protein 82
Alias_symbol (synonym)MGC45380
KIAA1948
Other alias
HGNC (Hugo) ZFP82
LocusID (NCBI) 284406
Atlas_Id 53474
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36388630 and ends at 36418674 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP82   28682
Cards
Atlas-
Entrez_Gene (NCBI)ZFP82  284406  ZFP82 zinc finger protein
AliasesZNF545
GeneCards (Weizmann)ZFP82
Ensembl hg19 (Hinxton)ENSG00000181007 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000181007 [Gene_View]  chr19:36388630-36418674 [Contig_View]  ZFP82 [Vega]
ICGC DataPortalENSG00000181007
TCGA cBioPortalZFP82
AceView (NCBI)ZFP82
Genatlas (Paris)ZFP82
WikiGenes284406
SOURCE (Princeton)ZFP82
Genetics Home Reference (NIH)ZFP82
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP82  -     chr19:36388630-36418674 -  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP82  -     19q13.12   [Description]    (hg19-Feb_2009)
EnsemblZFP82 - 19q13.12 [CytoView hg19]  ZFP82 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIZFP82 [Mapview hg19]  ZFP82 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB075828 AK074942 AK315709 AL707725 AL834267
RefSeq transcript (Entrez)NM_001321917 NM_001321918 NM_001321919 NM_133466
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP82
Cluster EST : UnigeneHs.558734 [ NCBI ]
CGAP (NCI)Hs.558734
Alternative Splicing GalleryENSG00000181007
Gene ExpressionZFP82 [ NCBI-GEO ]   ZFP82 [ EBI - ARRAY_EXPRESS ]   ZFP82 [ SEEK ]   ZFP82 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP82 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)284406
GTEX Portal (Tissue expression)ZFP82
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N141   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N141  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N141
Splice isoforms : SwissVarQ8N141
PhosPhoSitePlusQ8N141
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP82
DMDM Disease mutations284406
Blocks (Seattle)ZFP82
SuperfamilyQ8N141
Human Protein AtlasENSG00000181007
Peptide AtlasQ8N141
HPRD11725
IPIIPI00647567   IPI01014227   
Protein Interaction databases
DIP (DOE-UCLA)Q8N141
IntAct (EBI)Q8N141
FunCoupENSG00000181007
BioGRIDZFP82
STRING (EMBL)ZFP82
ZODIACZFP82
Ontologies - Pathways
QuickGOQ8N141
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP82
Atlas of Cancer Signalling NetworkZFP82
Wikipedia pathwaysZFP82
Orthology - Evolution
OrthoDB284406
GeneTree (enSembl)ENSG00000181007
Phylogenetic Trees/Animal Genes : TreeFamZFP82
HOVERGENQ8N141
HOGENOMQ8N141
Homologs : HomoloGeneZFP82
Homology/Alignments : Family Browser (UCSC)ZFP82
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP82 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP82
dbVarZFP82
ClinVarZFP82
1000_GenomesZFP82 
Exome Variant ServerZFP82
ExAC (Exome Aggregation Consortium)ZFP82 (select the gene name)
Genetic variants : HAPMAP284406
Genomic Variants (DGV)ZFP82 [DGVbeta]
DECIPHERZFP82 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP82 
Mutations
ICGC Data PortalZFP82 
TCGA Data PortalZFP82 
Broad Tumor PortalZFP82
OASIS PortalZFP82 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP82  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP82
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP82
DgiDB (Drug Gene Interaction Database)ZFP82
DoCM (Curated mutations)ZFP82 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP82 (select a term)
intoGenZFP82
Cancer3DZFP82(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFP82
Genetic Testing Registry ZFP82
NextProtQ8N141 [Medical]
TSGene284406
GENETestsZFP82
Target ValidationZFP82
Huge Navigator ZFP82 [HugePedia]
snp3D : Map Gene to Disease284406
BioCentury BCIQZFP82
ClinGenZFP82
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284406
Chemical/Pharm GKB GenePA162409714
Clinical trialZFP82
Miscellaneous
canSAR (ICR)ZFP82 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP82
EVEXZFP82
GoPubMedZFP82
iHOPZFP82
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 17:19:19 CEST 2017

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