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ZFP90 (ZFP90 zinc finger protein)

Identity

Alias_nameszinc finger protein 90 homolog (mouse)
Alias_symbol (synonym)KIAA1954
NK10
ZNF756
Other aliasFIK
zfp-90
HGNC (Hugo) ZFP90
LocusID (NCBI) 146198
Atlas_Id 78503
Location 16q22.1  [Link to chromosome band 16q22]
Location_base_pair Starts at 68539213 and ends at 68567136 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM94 (17q25.1) / ZFP90 (16q22.1)ZFYVE16 (5q14.1) / ZFP90 (16q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFP90   23329
Cards
Entrez_Gene (NCBI)ZFP90  146198  ZFP90 zinc finger protein
AliasesFIK; NK10; ZNF756; zfp-90
GeneCards (Weizmann)ZFP90
Ensembl hg19 (Hinxton)ENSG00000184939 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184939 [Gene_View]  chr16:68539213-68567136 [Contig_View]  ZFP90 [Vega]
ICGC DataPortalENSG00000184939
TCGA cBioPortalZFP90
AceView (NCBI)ZFP90
Genatlas (Paris)ZFP90
WikiGenes146198
SOURCE (Princeton)ZFP90
Genetics Home Reference (NIH)ZFP90
Genomic and cartography
GoldenPath hg38 (UCSC)ZFP90  -     chr16:68539213-68567136 +  16q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFP90  -     16q22.1   [Description]    (hg19-Feb_2009)
EnsemblZFP90 - 16q22.1 [CytoView hg19]  ZFP90 - 16q22.1 [CytoView hg38]
Mapping of homologs : NCBIZFP90 [Mapview hg19]  ZFP90 [Mapview hg38]
OMIM609451   
Gene and transcription
Genbank (Entrez)AA236523 AB075834 AK056596 AK074332 AK122847
RefSeq transcript (Entrez)NM_001305203 NM_001305204 NM_001305206 NM_001305207 NM_001305208 NM_133458
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFP90
Cluster EST : UnigeneHs.709017 [ NCBI ]
CGAP (NCI)Hs.709017
Alternative Splicing GalleryENSG00000184939
Gene ExpressionZFP90 [ NCBI-GEO ]   ZFP90 [ EBI - ARRAY_EXPRESS ]   ZFP90 [ SEEK ]   ZFP90 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFP90 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)146198
GTEX Portal (Tissue expression)ZFP90
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF47   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF47  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF47
Splice isoforms : SwissVarQ8TF47
PhosPhoSitePlusQ8TF47
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFP90
DMDM Disease mutations146198
Blocks (Seattle)ZFP90
SuperfamilyQ8TF47
Human Protein AtlasENSG00000184939
Peptide AtlasQ8TF47
HPRD18729
IPIIPI00291840   IPI00455382   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF47
IntAct (EBI)Q8TF47
FunCoupENSG00000184939
BioGRIDZFP90
STRING (EMBL)ZFP90
ZODIACZFP90
Ontologies - Pathways
QuickGOQ8TF47
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  nucleus  transcription, DNA-templated  negative regulation of DNA binding  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  DNA binding  nucleus  transcription, DNA-templated  negative regulation of DNA binding  positive regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZFP90
Atlas of Cancer Signalling NetworkZFP90
Wikipedia pathwaysZFP90
Orthology - Evolution
OrthoDB146198
GeneTree (enSembl)ENSG00000184939
Phylogenetic Trees/Animal Genes : TreeFamZFP90
HOVERGENQ8TF47
HOGENOMQ8TF47
Homologs : HomoloGeneZFP90
Homology/Alignments : Family Browser (UCSC)ZFP90
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFP90 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFP90
dbVarZFP90
ClinVarZFP90
1000_GenomesZFP90 
Exome Variant ServerZFP90
ExAC (Exome Aggregation Consortium)ZFP90 (select the gene name)
Genetic variants : HAPMAP146198
Genomic Variants (DGV)ZFP90 [DGVbeta]
DECIPHERZFP90 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFP90 
Mutations
ICGC Data PortalZFP90 
TCGA Data PortalZFP90 
Broad Tumor PortalZFP90
OASIS PortalZFP90 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFP90  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFP90
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFP90
DgiDB (Drug Gene Interaction Database)ZFP90
DoCM (Curated mutations)ZFP90 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFP90 (select a term)
intoGenZFP90
Cancer3DZFP90(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609451   
Orphanet
MedgenZFP90
Genetic Testing Registry ZFP90
NextProtQ8TF47 [Medical]
TSGene146198
GENETestsZFP90
Target ValidationZFP90
Huge Navigator ZFP90 [HugePedia]
snp3D : Map Gene to Disease146198
BioCentury BCIQZFP90
ClinGenZFP90
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD146198
Chemical/Pharm GKB GenePA134967487
Clinical trialZFP90
Miscellaneous
canSAR (ICR)ZFP90 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFP90
EVEXZFP90
GoPubMedZFP90
iHOPZFP90
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:43 CEST 2017

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