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ZFPL1 (zinc finger protein like 1)

Identity

Alias_symbol (synonym)D11S750
MCG4
Other alias
HGNC (Hugo) ZFPL1
LocusID (NCBI) 7542
Atlas_Id 75945
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 65084222 and ends at 65088402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RXRB (6p21.32) / ZFPL1 (11q13.1)ZFPL1 (11q13.1) / RXRB (6p21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFPL1   12868
Cards
Entrez_Gene (NCBI)ZFPL1  7542  zinc finger protein like 1
AliasesD11S750; MCG4
GeneCards (Weizmann)ZFPL1
Ensembl hg19 (Hinxton)ENSG00000162300 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162300 [Gene_View]  chr11:65084222-65088402 [Contig_View]  ZFPL1 [Vega]
ICGC DataPortalENSG00000162300
TCGA cBioPortalZFPL1
AceView (NCBI)ZFPL1
Genatlas (Paris)ZFPL1
WikiGenes7542
SOURCE (Princeton)ZFPL1
Genetics Home Reference (NIH)ZFPL1
Genomic and cartography
GoldenPath hg38 (UCSC)ZFPL1  -     chr11:65084222-65088402 +  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFPL1  -     11q13.1   [Description]    (hg19-Feb_2009)
EnsemblZFPL1 - 11q13.1 [CytoView hg19]  ZFPL1 - 11q13.1 [CytoView hg38]
Mapping of homologs : NCBIZFPL1 [Mapview hg19]  ZFPL1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF001891 AF030291 AF043611 AI207587 AK291964
RefSeq transcript (Entrez)NM_006782
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFPL1
Cluster EST : UnigeneHs.712317 [ NCBI ]
CGAP (NCI)Hs.712317
Alternative Splicing GalleryENSG00000162300
Gene ExpressionZFPL1 [ NCBI-GEO ]   ZFPL1 [ EBI - ARRAY_EXPRESS ]   ZFPL1 [ SEEK ]   ZFPL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFPL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7542
GTEX Portal (Tissue expression)ZFPL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95159   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95159  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95159
Splice isoforms : SwissVarO95159
PhosPhoSitePlusO95159
Domains : Interpro (EBI)Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZFPL1
DMDM Disease mutations7542
Blocks (Seattle)ZFPL1
SuperfamilyO95159
Human Protein AtlasENSG00000162300
Peptide AtlasO95159
HPRD15729
IPIIPI00296374   IPI00984484   IPI00976748   IPI00909606   IPI00983173   IPI00985058   IPI00976010   IPI00980830   IPI00977300   
Protein Interaction databases
DIP (DOE-UCLA)O95159
IntAct (EBI)O95159
FunCoupENSG00000162300
BioGRIDZFPL1
STRING (EMBL)ZFPL1
ZODIACZFPL1
Ontologies - Pathways
QuickGOO95159
Ontology : AmiGODNA binding  nucleus  Golgi apparatus  regulation of transcription, DNA-templated  zinc ion binding  integral component of membrane  vesicle-mediated transport  
Ontology : EGO-EBIDNA binding  nucleus  Golgi apparatus  regulation of transcription, DNA-templated  zinc ion binding  integral component of membrane  vesicle-mediated transport  
NDEx NetworkZFPL1
Atlas of Cancer Signalling NetworkZFPL1
Wikipedia pathwaysZFPL1
Orthology - Evolution
OrthoDB7542
GeneTree (enSembl)ENSG00000162300
Phylogenetic Trees/Animal Genes : TreeFamZFPL1
HOVERGENO95159
HOGENOMO95159
Homologs : HomoloGeneZFPL1
Homology/Alignments : Family Browser (UCSC)ZFPL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFPL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFPL1
dbVarZFPL1
ClinVarZFPL1
1000_GenomesZFPL1 
Exome Variant ServerZFPL1
ExAC (Exome Aggregation Consortium)ZFPL1 (select the gene name)
Genetic variants : HAPMAP7542
Genomic Variants (DGV)ZFPL1 [DGVbeta]
DECIPHERZFPL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFPL1 
Mutations
ICGC Data PortalZFPL1 
TCGA Data PortalZFPL1 
Broad Tumor PortalZFPL1
OASIS PortalZFPL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFPL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFPL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFPL1
DgiDB (Drug Gene Interaction Database)ZFPL1
DoCM (Curated mutations)ZFPL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFPL1 (select a term)
intoGenZFPL1
Cancer3DZFPL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFPL1
Genetic Testing Registry ZFPL1
NextProtO95159 [Medical]
TSGene7542
GENETestsZFPL1
Huge Navigator ZFPL1 [HugePedia]
snp3D : Map Gene to Disease7542
BioCentury BCIQZFPL1
ClinGenZFPL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7542
Chemical/Pharm GKB GenePA37457
Clinical trialZFPL1
Miscellaneous
canSAR (ICR)ZFPL1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFPL1
EVEXZFPL1
GoPubMedZFPL1
iHOPZFPL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:18 CEST 2017

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