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ZFR2 (zinc finger RNA binding protein 2)

Identity

Alias_namesKIAA1086
KIAA1086
Other alias
HGNC (Hugo) ZFR2
LocusID (NCBI) 23217
Atlas_Id 75948
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 3851813 and ends at 3869029 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
MKNK2 (19p13.3) / ZFR2 (19p13.3)PIAS4 (19p13.3) / ZFR2 (19p13.3)ZBTB45 (19q13.43) / ZFR2 (19p13.3)
ZFR2 (19p13.3) / DDX17 (22q13.1)ZBTB45 ZFR2MKNK2 ZFR2
PIAS4 ZFR2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFR2   29189
Cards
Entrez_Gene (NCBI)ZFR2  23217  zinc finger RNA binding protein 2
AliasesKIAA1086
GeneCards (Weizmann)ZFR2
Ensembl hg19 (Hinxton)ENSG00000105278 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105278 [Gene_View]  chr19:3851813-3869029 [Contig_View]  ZFR2 [Vega]
ICGC DataPortalENSG00000105278
TCGA cBioPortalZFR2
AceView (NCBI)ZFR2
Genatlas (Paris)ZFR2
WikiGenes23217
SOURCE (Princeton)ZFR2
Genetics Home Reference (NIH)ZFR2
Genomic and cartography
GoldenPath hg38 (UCSC)ZFR2  -     chr19:3851813-3869029 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFR2  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblZFR2 - 19p13.3 [CytoView hg19]  ZFR2 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIZFR2 [Mapview hg19]  ZFR2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB029009 AK295037 AL365406 BC034005 DA333602
RefSeq transcript (Entrez)NM_001145640 NM_015174
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFR2
Cluster EST : UnigeneHs.65750 [ NCBI ]
CGAP (NCI)Hs.65750
Alternative Splicing GalleryENSG00000105278
Gene ExpressionZFR2 [ NCBI-GEO ]   ZFR2 [ EBI - ARRAY_EXPRESS ]   ZFR2 [ SEEK ]   ZFR2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23217
GTEX Portal (Tissue expression)ZFR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UPR6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UPR6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UPR6
Splice isoforms : SwissVarQ9UPR6
PhosPhoSitePlusQ9UPR6
Domaine pattern : Prosite (Expaxy)DZF (PS51703)   
Domains : Interpro (EBI)DZF_dom    Znf_C2H2    Znf_C2H2-like    Znf_U1   
Domain families : Pfam (Sanger)DZF (PF07528)   
Domain families : Pfam (NCBI)pfam07528   
Domain families : Smart (EMBL)DZF (SM00572)  ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZFR2
DMDM Disease mutations23217
Blocks (Seattle)ZFR2
SuperfamilyQ9UPR6
Human Protein AtlasENSG00000105278
Peptide AtlasQ9UPR6
IPIIPI00238277   IPI00923476   IPI00909524   
Protein Interaction databases
DIP (DOE-UCLA)Q9UPR6
IntAct (EBI)Q9UPR6
FunCoupENSG00000105278
BioGRIDZFR2
STRING (EMBL)ZFR2
ZODIACZFR2
Ontologies - Pathways
QuickGOQ9UPR6
Ontology : AmiGOnucleic acid binding  zinc ion binding  
Ontology : EGO-EBInucleic acid binding  zinc ion binding  
NDEx NetworkZFR2
Atlas of Cancer Signalling NetworkZFR2
Wikipedia pathwaysZFR2
Orthology - Evolution
OrthoDB23217
GeneTree (enSembl)ENSG00000105278
Phylogenetic Trees/Animal Genes : TreeFamZFR2
HOVERGENQ9UPR6
HOGENOMQ9UPR6
Homologs : HomoloGeneZFR2
Homology/Alignments : Family Browser (UCSC)ZFR2
Gene fusions - Rearrangements
Fusion: TCGAZBTB45 ZFR2
Fusion: TCGAMKNK2 ZFR2
Fusion: TCGAPIAS4 ZFR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFR2
dbVarZFR2
ClinVarZFR2
1000_GenomesZFR2 
Exome Variant ServerZFR2
ExAC (Exome Aggregation Consortium)ZFR2 (select the gene name)
Genetic variants : HAPMAP23217
Genomic Variants (DGV)ZFR2 [DGVbeta]
DECIPHERZFR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFR2 
Mutations
ICGC Data PortalZFR2 
TCGA Data PortalZFR2 
Broad Tumor PortalZFR2
OASIS PortalZFR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFR2
DgiDB (Drug Gene Interaction Database)ZFR2
DoCM (Curated mutations)ZFR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFR2 (select a term)
intoGenZFR2
Cancer3DZFR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZFR2
Genetic Testing Registry ZFR2
NextProtQ9UPR6 [Medical]
TSGene23217
GENETestsZFR2
Target ValidationZFR2
Huge Navigator ZFR2 [HugePedia]
snp3D : Map Gene to Disease23217
BioCentury BCIQZFR2
ClinGenZFR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23217
Chemical/Pharm GKB GenePA162409746
Clinical trialZFR2
Miscellaneous
canSAR (ICR)ZFR2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFR2
EVEXZFR2
GoPubMedZFR2
iHOPZFR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:18 CEST 2017

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