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ZFY (zinc finger protein, Y-linked)

Identity

Alias_symbol (synonym)ZNF911
Other alias
HGNC (Hugo) ZFY
LocusID (NCBI) 7544
Atlas_Id 75950
Location Yp11.2  [Link to chromosome band Yp11]
Location_base_pair Starts at 2935477 and ends at 2982506 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFY   12870
Cards
Entrez_Gene (NCBI)ZFY  7544  zinc finger protein, Y-linked
AliasesZNF911
GeneCards (Weizmann)ZFY
Ensembl hg19 (Hinxton)ENSG00000067646 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067646 [Gene_View]  chrY:2935477-2982506 [Contig_View]  ZFY [Vega]
ICGC DataPortalENSG00000067646
TCGA cBioPortalZFY
AceView (NCBI)ZFY
Genatlas (Paris)ZFY
WikiGenes7544
SOURCE (Princeton)ZFY
Genetics Home Reference (NIH)ZFY
Genomic and cartography
GoldenPath hg38 (UCSC)ZFY  -     chrY:2935477-2982506 +  Yp11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFY  -     Yp11.2   [Description]    (hg19-Feb_2009)
EnsemblZFY - Yp11.2 [CytoView hg19]  ZFY - Yp11.2 [CytoView hg38]
Mapping of homologs : NCBIZFY [Mapview hg19]  ZFY [Mapview hg38]
OMIM490000   
Gene and transcription
Genbank (Entrez)AI469059 AI763177 AK301061 AK310553 AL137603
RefSeq transcript (Entrez)NM_001145275 NM_001145276 NM_003411
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFY
Cluster EST : UnigeneHs.522845 [ NCBI ]
CGAP (NCI)Hs.522845
Alternative Splicing GalleryENSG00000067646
Gene ExpressionZFY [ NCBI-GEO ]   ZFY [ EBI - ARRAY_EXPRESS ]   ZFY [ SEEK ]   ZFY [ MEM ]
Gene Expression Viewer (FireBrowse)ZFY [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7544
GTEX Portal (Tissue expression)ZFY
Human Protein AtlasENSG00000067646-ZFY [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP08048   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP08048  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP08048
Splice isoforms : SwissVarP08048
PhosPhoSitePlusP08048
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Transcrp_activ_Zfx/Zfy-dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)    Zfx_Zfy_act (PF04704)   
Domain families : Pfam (NCBI)pfam00096    pfam04704   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZFY
DMDM Disease mutations7544
Blocks (Seattle)ZFY
PDB (SRS)1KLR    1KLS    1XRZ    5ZNF    7ZNF   
PDB (PDBSum)1KLR    1KLS    1XRZ    5ZNF    7ZNF   
PDB (IMB)1KLR    1KLS    1XRZ    5ZNF    7ZNF   
PDB (RSDB)1KLR    1KLS    1XRZ    5ZNF    7ZNF   
Structural Biology KnowledgeBase1KLR    1KLS    1XRZ    5ZNF    7ZNF   
SCOP (Structural Classification of Proteins)1KLR    1KLS    1XRZ    5ZNF    7ZNF   
CATH (Classification of proteins structures)1KLR    1KLS    1XRZ    5ZNF    7ZNF   
SuperfamilyP08048
Human Protein Atlas [tissue]ENSG00000067646-ZFY [tissue]
Peptide AtlasP08048
HPRD02466
IPIIPI00027202   IPI00794264   IPI00921831   IPI00645040   
Protein Interaction databases
DIP (DOE-UCLA)P08048
IntAct (EBI)P08048
FunCoupENSG00000067646
BioGRIDZFY
STRING (EMBL)ZFY
ZODIACZFY
Ontologies - Pathways
QuickGOP08048
Ontology : AmiGODNA binding  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  metal ion binding  
NDEx NetworkZFY
Atlas of Cancer Signalling NetworkZFY
Wikipedia pathwaysZFY
Orthology - Evolution
OrthoDB7544
GeneTree (enSembl)ENSG00000067646
Phylogenetic Trees/Animal Genes : TreeFamZFY
HOVERGENP08048
HOGENOMP08048
Homologs : HomoloGeneZFY
Homology/Alignments : Family Browser (UCSC)ZFY
Gene fusions - Rearrangements
Tumor Fusion PortalZFY
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFY [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFY
dbVarZFY
ClinVarZFY
1000_GenomesZFY 
Exome Variant ServerZFY
ExAC (Exome Aggregation Consortium)ENSG00000067646
GNOMAD BrowserENSG00000067646
Genetic variants : HAPMAP7544
Genomic Variants (DGV)ZFY [DGVbeta]
DECIPHERZFY [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFY 
Mutations
ICGC Data PortalZFY 
TCGA Data PortalZFY 
Broad Tumor PortalZFY
OASIS PortalZFY [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFY  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFY
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFY
DgiDB (Drug Gene Interaction Database)ZFY
DoCM (Curated mutations)ZFY (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFY (select a term)
intoGenZFY
Cancer3DZFY(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM490000   
Orphanet
DisGeNETZFY
MedgenZFY
Genetic Testing Registry ZFY
NextProtP08048 [Medical]
TSGene7544
GENETestsZFY
Target ValidationZFY
Huge Navigator ZFY [HugePedia]
snp3D : Map Gene to Disease7544
BioCentury BCIQZFY
ClinGenZFY
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7544
Chemical/Pharm GKB GenePA37459
Clinical trialZFY
Miscellaneous
canSAR (ICR)ZFY (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFY
EVEXZFY
GoPubMedZFY
iHOPZFY
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:01:21 CET 2017

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