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ZFYVE21 (zinc finger FYVE-type containing 21)

Identity

Alias_nameszinc finger
Alias_symbol (synonym)MGC2550
ZF21
Other aliasHCVP7TP1
HGNC (Hugo) ZFYVE21
LocusID (NCBI) 79038
Atlas_Id 53575
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 103715744 and ends at 103733668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZFYVE21 (14q32.33) / BACH1 (21q21.3)ZFYVE21 (14q32.33) / BIN1 (2q14.3)ZFYVE21 (14q32.33) / RERE (1p36.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZFYVE21   20760
Cards
Entrez_Gene (NCBI)ZFYVE21  79038  zinc finger FYVE-type containing 21
AliasesHCVP7TP1; ZF21
GeneCards (Weizmann)ZFYVE21
Ensembl hg19 (Hinxton)ENSG00000100711 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100711 [Gene_View]  chr14:103715744-103733668 [Contig_View]  ZFYVE21 [Vega]
ICGC DataPortalENSG00000100711
TCGA cBioPortalZFYVE21
AceView (NCBI)ZFYVE21
Genatlas (Paris)ZFYVE21
WikiGenes79038
SOURCE (Princeton)ZFYVE21
Genetics Home Reference (NIH)ZFYVE21
Genomic and cartography
GoldenPath hg38 (UCSC)ZFYVE21  -     chr14:103715744-103733668 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFYVE21  -     14q32.33   [Description]    (hg19-Feb_2009)
EnsemblZFYVE21 - 14q32.33 [CytoView hg19]  ZFYVE21 - 14q32.33 [CytoView hg38]
Mapping of homologs : NCBIZFYVE21 [Mapview hg19]  ZFYVE21 [Mapview hg38]
OMIM613504   
Gene and transcription
Genbank (Entrez)AK001921 AK057816 AK124507 AK226142 AK290519
RefSeq transcript (Entrez)NM_001198953 NM_024071
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFYVE21
Cluster EST : UnigeneHs.592322 [ NCBI ]
CGAP (NCI)Hs.592322
Alternative Splicing GalleryENSG00000100711
Gene ExpressionZFYVE21 [ NCBI-GEO ]   ZFYVE21 [ EBI - ARRAY_EXPRESS ]   ZFYVE21 [ SEEK ]   ZFYVE21 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFYVE21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79038
GTEX Portal (Tissue expression)ZFYVE21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ24   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ24  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ24
Splice isoforms : SwissVarQ9BQ24
PhosPhoSitePlusQ9BQ24
Domaine pattern : Prosite (Expaxy)ZF_FYVE (PS50178)   
Domains : Interpro (EBI)ZFYVE21_C    Znf_FYVE    Znf_FYVE-rel    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FYVE (PF01363)    ZFYVE21_C (PF16696)   
Domain families : Pfam (NCBI)pfam01363    pfam16696   
Domain families : Smart (EMBL)FYVE (SM00064)  
Conserved Domain (NCBI)ZFYVE21
DMDM Disease mutations79038
Blocks (Seattle)ZFYVE21
PDB (SRS)2RRF   
PDB (PDBSum)2RRF   
PDB (IMB)2RRF   
PDB (RSDB)2RRF   
Structural Biology KnowledgeBase2RRF   
SCOP (Structural Classification of Proteins)2RRF   
CATH (Classification of proteins structures)2RRF   
SuperfamilyQ9BQ24
Human Protein AtlasENSG00000100711
Peptide AtlasQ9BQ24
HPRD15733
IPIIPI00031636   IPI00102182   IPI00446246   IPI01025169   IPI01024848   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ24
IntAct (EBI)Q9BQ24
FunCoupENSG00000100711
BioGRIDZFYVE21
STRING (EMBL)ZFYVE21
ZODIACZFYVE21
Ontologies - Pathways
QuickGOQ9BQ24
Ontology : AmiGO1-phosphatidylinositol-3-phosphate 5-kinase activity  protein binding  cytosol  focal adhesion  'de novo' protein folding  endosome membrane  retrograde transport, endosome to Golgi  protein binding involved in protein folding  phosphatidylinositol phosphorylation  metal ion binding  unfolded protein binding  chaperone-mediated protein folding  
Ontology : EGO-EBI1-phosphatidylinositol-3-phosphate 5-kinase activity  protein binding  cytosol  focal adhesion  'de novo' protein folding  endosome membrane  retrograde transport, endosome to Golgi  protein binding involved in protein folding  phosphatidylinositol phosphorylation  metal ion binding  unfolded protein binding  chaperone-mediated protein folding  
NDEx NetworkZFYVE21
Atlas of Cancer Signalling NetworkZFYVE21
Wikipedia pathwaysZFYVE21
Orthology - Evolution
OrthoDB79038
GeneTree (enSembl)ENSG00000100711
Phylogenetic Trees/Animal Genes : TreeFamZFYVE21
HOVERGENQ9BQ24
HOGENOMQ9BQ24
Homologs : HomoloGeneZFYVE21
Homology/Alignments : Family Browser (UCSC)ZFYVE21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFYVE21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFYVE21
dbVarZFYVE21
ClinVarZFYVE21
1000_GenomesZFYVE21 
Exome Variant ServerZFYVE21
ExAC (Exome Aggregation Consortium)ZFYVE21 (select the gene name)
Genetic variants : HAPMAP79038
Genomic Variants (DGV)ZFYVE21 [DGVbeta]
DECIPHERZFYVE21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFYVE21 
Mutations
ICGC Data PortalZFYVE21 
TCGA Data PortalZFYVE21 
Broad Tumor PortalZFYVE21
OASIS PortalZFYVE21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFYVE21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFYVE21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFYVE21
DgiDB (Drug Gene Interaction Database)ZFYVE21
DoCM (Curated mutations)ZFYVE21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFYVE21 (select a term)
intoGenZFYVE21
Cancer3DZFYVE21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613504   
Orphanet
MedgenZFYVE21
Genetic Testing Registry ZFYVE21
NextProtQ9BQ24 [Medical]
TSGene79038
GENETestsZFYVE21
Target ValidationZFYVE21
Huge Navigator ZFYVE21 [HugePedia]
snp3D : Map Gene to Disease79038
BioCentury BCIQZFYVE21
ClinGenZFYVE21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79038
Chemical/Pharm GKB GenePA134879875
Clinical trialZFYVE21
Miscellaneous
canSAR (ICR)ZFYVE21 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFYVE21
EVEXZFYVE21
GoPubMedZFYVE21
iHOPZFYVE21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:38:58 CEST 2017

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