Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ZFYVE27 (zinc finger FYVE-type containing 27)

Identity

Alias_nameszinc finger, FYVE domain containing 27
Alias_symbol (synonym)FLJ32919
SPG33
Other aliasPROTRUDIN
HGNC (Hugo) ZFYVE27
LocusID (NCBI) 118813
Atlas_Id 75954
Location 10q24.2  [Link to chromosome band 10q24]
Location_base_pair Starts at 97738477 and ends at 97760907 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		SAMD11 (1p36.33) / ZFYVE27 (10q24.2)ZFYVE27 (10q24.2) / LOC100507412 (-)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZFYVE27   26559
Cards
Entrez_Gene (NCBI)ZFYVE27  118813  zinc finger FYVE-type containing 27
AliasesPROTRUDIN; SPG33
GeneCards (Weizmann)ZFYVE27
Ensembl hg19 (Hinxton)ENSG00000155256 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155256 [Gene_View]  chr10:97738477-97760907 [Contig_View]  ZFYVE27 [Vega]
ICGC DataPortalENSG00000155256
TCGA cBioPortalZFYVE27
AceView (NCBI)ZFYVE27
Genatlas (Paris)ZFYVE27
WikiGenes118813
SOURCE (Princeton)ZFYVE27
Genetics Home Reference (NIH)ZFYVE27
Genomic and cartography
GoldenPath hg38 (UCSC)ZFYVE27  -     chr10:97738477-97760907 +  10q24.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZFYVE27  -     10q24.2   [Description]    (hg19-Feb_2009)
EnsemblZFYVE27 - 10q24.2 [CytoView hg19]  ZFYVE27 - 10q24.2 [CytoView hg38]
Mapping of homologs : NCBIZFYVE27 [Mapview hg19]  ZFYVE27 [Mapview hg38]
OMIM610243   610244   
Gene and transcription
Genbank (Entrez)AK057481 AK074876 AK097945 AK296295 AK296588
RefSeq transcript (Entrez)NM_001002261 NM_001002262 NM_001174119 NM_001174120 NM_001174121 NM_001174122 NM_144588
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZFYVE27
Cluster EST : UnigeneHs.744075 [ NCBI ]
CGAP (NCI)Hs.744075
Alternative Splicing GalleryENSG00000155256
Gene ExpressionZFYVE27 [ NCBI-GEO ]   ZFYVE27 [ EBI - ARRAY_EXPRESS ]   ZFYVE27 [ SEEK ]   ZFYVE27 [ MEM ]
Gene Expression Viewer (FireBrowse)ZFYVE27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118813
GTEX Portal (Tissue expression)ZFYVE27
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4F4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4F4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4F4
Splice isoforms : SwissVarQ5T4F4
PhosPhoSitePlusQ5T4F4
Domaine pattern : Prosite (Expaxy)ZF_FYVE (PS50178)   
Domains : Interpro (EBI)Znf_FYVE    Znf_FYVE-rel    Znf_FYVE_PHD    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)FYVE (PF01363)   
Domain families : Pfam (NCBI)pfam01363   
Domain families : Smart (EMBL)FYVE (SM00064)  
Conserved Domain (NCBI)ZFYVE27
DMDM Disease mutations118813
Blocks (Seattle)ZFYVE27
PDB (SRS)1X4U   
PDB (PDBSum)1X4U   
PDB (IMB)1X4U   
PDB (RSDB)1X4U   
Structural Biology KnowledgeBase1X4U   
SCOP (Structural Classification of Proteins)1X4U   
CATH (Classification of proteins structures)1X4U   
SuperfamilyQ5T4F4
Human Protein AtlasENSG00000155256
Peptide AtlasQ5T4F4
HPRD15735
IPIIPI00332094   IPI00301446   IPI00434983   IPI00166179   IPI00927269   IPI00956753   IPI00956653   IPI00922790   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4F4
IntAct (EBI)Q5T4F4
FunCoupENSG00000155256
BioGRIDZFYVE27
STRING (EMBL)ZFYVE27
ZODIACZFYVE27
Ontologies - Pathways
QuickGOQ5T4F4
Ontology : AmiGOprotein binding  endoplasmic reticulum  vesicle-mediated transport  integral component of endoplasmic reticulum membrane  axon  dendrite  neuron projection development  growth cone membrane  protein self-association  positive regulation of axon extension  metal ion binding  neurotrophin TRK receptor signaling pathway  recycling endosome membrane  endoplasmic reticulum tubular network  endoplasmic reticulum tubular network formation  protein localization to plasma membrane  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  vesicle-mediated transport  integral component of endoplasmic reticulum membrane  axon  dendrite  neuron projection development  growth cone membrane  protein self-association  positive regulation of axon extension  metal ion binding  neurotrophin TRK receptor signaling pathway  recycling endosome membrane  endoplasmic reticulum tubular network  endoplasmic reticulum tubular network formation  protein localization to plasma membrane  
NDEx NetworkZFYVE27
Atlas of Cancer Signalling NetworkZFYVE27
Wikipedia pathwaysZFYVE27
Orthology - Evolution
OrthoDB118813
GeneTree (enSembl)ENSG00000155256
Phylogenetic Trees/Animal Genes : TreeFamZFYVE27
HOVERGENQ5T4F4
HOGENOMQ5T4F4
Homologs : HomoloGeneZFYVE27
Homology/Alignments : Family Browser (UCSC)ZFYVE27
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZFYVE27 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZFYVE27
dbVarZFYVE27
ClinVarZFYVE27
1000_GenomesZFYVE27 
Exome Variant ServerZFYVE27
ExAC (Exome Aggregation Consortium)ZFYVE27 (select the gene name)
Genetic variants : HAPMAP118813
Genomic Variants (DGV)ZFYVE27 [DGVbeta]
DECIPHERZFYVE27 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZFYVE27 
Mutations
ICGC Data PortalZFYVE27 
TCGA Data PortalZFYVE27 
Broad Tumor PortalZFYVE27
OASIS PortalZFYVE27 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZFYVE27  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZFYVE27
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZFYVE27
DgiDB (Drug Gene Interaction Database)ZFYVE27
DoCM (Curated mutations)ZFYVE27 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZFYVE27 (select a term)
intoGenZFYVE27
Cancer3DZFYVE27(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610243    610244   
Orphanet
MedgenZFYVE27
Genetic Testing Registry ZFYVE27
NextProtQ5T4F4 [Medical]
TSGene118813
GENETestsZFYVE27
Target ValidationZFYVE27
Huge Navigator ZFYVE27 [HugePedia]
snp3D : Map Gene to Disease118813
BioCentury BCIQZFYVE27
ClinGenZFYVE27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118813
Chemical/Pharm GKB GenePA134863310
Clinical trialZFYVE27
Miscellaneous
canSAR (ICR)ZFYVE27 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZFYVE27
EVEXZFYVE27
GoPubMedZFYVE27
iHOPZFYVE27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Sep 18 13:44:19 CEST 2017
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