Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZG16 (zymogen granule protein 16)

Identity

Alias_namesJCLN
jacalin-like lectin domain containing
zymogen granule protein 16 homolog (rat)
Alias_symbol (synonym)hZG16
JCLN1
ZG16A
Other alias
HGNC (Hugo) ZG16
LocusID (NCBI) 653808
Atlas_Id 50784
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29789561 and ends at 29792969 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZG16   30961
Cards
Entrez_Gene (NCBI)ZG16  653808  zymogen granule protein 16
AliasesJCLN; JCLN1; ZG16A
GeneCards (Weizmann)ZG16
Ensembl hg19 (Hinxton)ENSG00000174992 [Gene_View]  chr16:29789561-29792969 [Contig_View]  ZG16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174992 [Gene_View]  chr16:29789561-29792969 [Contig_View]  ZG16 [Vega]
ICGC DataPortalENSG00000174992
TCGA cBioPortalZG16
AceView (NCBI)ZG16
Genatlas (Paris)ZG16
WikiGenes653808
SOURCE (Princeton)ZG16
Genetics Home Reference (NIH)ZG16
Genomic and cartography
GoldenPath hg19 (UCSC)ZG16  -     chr16:29789561-29792969 +  16p11.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZG16  -     16p11.2   [Description]    (hg38-Dec_2013)
EnsemblZG16 - 16p11.2 [CytoView hg19]  ZG16 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIZG16 [Mapview hg19]  ZG16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB092813 AK125559 AK312002 BC029149 BC150656
RefSeq transcript (Entrez)NM_152338
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)ZG16
Cluster EST : UnigeneHs.632195 [ NCBI ]
CGAP (NCI)Hs.632195
Alternative Splicing GalleryENSG00000174992
Gene ExpressionZG16 [ NCBI-GEO ]   ZG16 [ EBI - ARRAY_EXPRESS ]   ZG16 [ SEEK ]   ZG16 [ MEM ]
Gene Expression Viewer (FireBrowse)ZG16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653808
GTEX Portal (Tissue expression)ZG16
Protein : pattern, domain, 3D structure
UniProt/SwissProtO60844   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO60844  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO60844
Splice isoforms : SwissVarO60844
PhosPhoSitePlusO60844
Domaine pattern : Prosite (Expaxy)JACALIN_LECTIN (PS51752)   
Domains : Interpro (EBI)Jacalin-like_lectin_dom   
Domain families : Pfam (Sanger)Jacalin (PF01419)   
Domain families : Pfam (NCBI)pfam01419   
Domain families : Smart (EMBL)Jacalin (SM00915)  
Conserved Domain (NCBI)ZG16
DMDM Disease mutations653808
Blocks (Seattle)ZG16
PDB (SRS)3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
PDB (PDBSum)3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
PDB (IMB)3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
PDB (RSDB)3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
Structural Biology KnowledgeBase3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
SCOP (Structural Classification of Proteins)3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
CATH (Classification of proteins structures)3APA    3VY6    3VY7    3VZE    3VZF    3VZG   
SuperfamilyO60844
Human Protein AtlasENSG00000174992
Peptide AtlasO60844
IPIIPI00029647   
Protein Interaction databases
DIP (DOE-UCLA)O60844
IntAct (EBI)O60844
FunCoupENSG00000174992
BioGRIDZG16
STRING (EMBL)ZG16
ZODIACZG16
Ontologies - Pathways
QuickGOO60844
Ontology : AmiGOprotein binding  proteinaceous extracellular matrix  Golgi lumen  protein transport  carbohydrate binding  extracellular matrix  zymogen granule membrane  cytoplasmic membrane-bounded vesicle lumen  
Ontology : EGO-EBIprotein binding  proteinaceous extracellular matrix  Golgi lumen  protein transport  carbohydrate binding  extracellular matrix  zymogen granule membrane  cytoplasmic membrane-bounded vesicle lumen  
NDEx NetworkZG16
Atlas of Cancer Signalling NetworkZG16
Wikipedia pathwaysZG16
Orthology - Evolution
OrthoDB653808
GeneTree (enSembl)ENSG00000174992
Phylogenetic Trees/Animal Genes : TreeFamZG16
HOVERGENO60844
HOGENOMO60844
Homologs : HomoloGeneZG16
Homology/Alignments : Family Browser (UCSC)ZG16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZG16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZG16
dbVarZG16
ClinVarZG16
1000_GenomesZG16 
Exome Variant ServerZG16
ExAC (Exome Aggregation Consortium)ZG16 (select the gene name)
Genetic variants : HAPMAP653808
Genomic Variants (DGV)ZG16 [DGVbeta]
DECIPHER (Syndromes)16:29789561-29792969  ENSG00000174992
CONAN: Copy Number AnalysisZG16 
Mutations
ICGC Data PortalZG16 
TCGA Data PortalZG16 
Broad Tumor PortalZG16
OASIS PortalZG16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZG16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZG16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZG16
DgiDB (Drug Gene Interaction Database)ZG16
DoCM (Curated mutations)ZG16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZG16 (select a term)
intoGenZG16
Cancer3DZG16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZG16
Genetic Testing Registry ZG16
NextProtO60844 [Medical]
TSGene653808
GENETestsZG16
Huge Navigator ZG16 [HugePedia]
snp3D : Map Gene to Disease653808
BioCentury BCIQZG16
ClinGenZG16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD653808
Chemical/Pharm GKB GenePA164727719
Clinical trialZG16
Miscellaneous
canSAR (ICR)ZG16 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZG16
EVEXZG16
GoPubMedZG16
iHOPZG16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:51 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.