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ZG16B (zymogen granule protein 16B)

Identity

Alias_nameszymogen granule protein 16 homolog B (rat)
Alias_symbol (synonym)HRPE773
PRO1567
JCLN2
Other aliasEECP
PAUF
HGNC (Hugo) ZG16B
LocusID (NCBI) 124220
Atlas_Id 50962
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2830172 and ends at 2832284 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZG16B   30456
Cards
Entrez_Gene (NCBI)ZG16B  124220  zymogen granule protein 16B
AliasesEECP; HRPE773; JCLN2; PAUF; 
PRO1567
GeneCards (Weizmann)ZG16B
Ensembl hg19 (Hinxton)ENSG00000162078 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162078 [Gene_View]  chr16:2830172-2832284 [Contig_View]  ZG16B [Vega]
ICGC DataPortalENSG00000162078
TCGA cBioPortalZG16B
AceView (NCBI)ZG16B
Genatlas (Paris)ZG16B
WikiGenes124220
SOURCE (Princeton)ZG16B
Genetics Home Reference (NIH)ZG16B
Genomic and cartography
GoldenPath hg38 (UCSC)ZG16B  -     chr16:2830172-2832284 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZG16B  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblZG16B - 16p13.3 [CytoView hg19]  ZG16B - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIZG16B [Mapview hg19]  ZG16B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK311810 AM392915 AM393869 AY359021 BC009722
RefSeq transcript (Entrez)NM_145252
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZG16B
Cluster EST : UnigeneHs.105887 [ NCBI ]
CGAP (NCI)Hs.105887
Alternative Splicing GalleryENSG00000162078
Gene ExpressionZG16B [ NCBI-GEO ]   ZG16B [ EBI - ARRAY_EXPRESS ]   ZG16B [ SEEK ]   ZG16B [ MEM ]
Gene Expression Viewer (FireBrowse)ZG16B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124220
GTEX Portal (Tissue expression)ZG16B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96DA0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96DA0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96DA0
Splice isoforms : SwissVarQ96DA0
PhosPhoSitePlusQ96DA0
Domaine pattern : Prosite (Expaxy)JACALIN_LECTIN (PS51752)   
Domains : Interpro (EBI)Jacalin-like_lectin_dom   
Domain families : Pfam (Sanger)Jacalin (PF01419)   
Domain families : Pfam (NCBI)pfam01419   
Domain families : Smart (EMBL)Jacalin (SM00915)  
Conserved Domain (NCBI)ZG16B
DMDM Disease mutations124220
Blocks (Seattle)ZG16B
PDB (SRS)3AQG   
PDB (PDBSum)3AQG   
PDB (IMB)3AQG   
PDB (RSDB)3AQG   
Structural Biology KnowledgeBase3AQG   
SCOP (Structural Classification of Proteins)3AQG   
CATH (Classification of proteins structures)3AQG   
SuperfamilyQ96DA0
Human Protein AtlasENSG00000162078
Peptide AtlasQ96DA0
HPRD14024
IPIIPI00060800   
Protein Interaction databases
DIP (DOE-UCLA)Q96DA0
IntAct (EBI)Q96DA0
FunCoupENSG00000162078
BioGRIDZG16B
STRING (EMBL)ZG16B
ZODIACZG16B
Ontologies - Pathways
QuickGOQ96DA0
Ontology : AmiGOretina homeostasis  molecular_function  extracellular space  carbohydrate binding  extracellular exosome  
Ontology : EGO-EBIretina homeostasis  molecular_function  extracellular space  carbohydrate binding  extracellular exosome  
NDEx NetworkZG16B
Atlas of Cancer Signalling NetworkZG16B
Wikipedia pathwaysZG16B
Orthology - Evolution
OrthoDB124220
GeneTree (enSembl)ENSG00000162078
Phylogenetic Trees/Animal Genes : TreeFamZG16B
HOVERGENQ96DA0
HOGENOMQ96DA0
Homologs : HomoloGeneZG16B
Homology/Alignments : Family Browser (UCSC)ZG16B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZG16B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZG16B
dbVarZG16B
ClinVarZG16B
1000_GenomesZG16B 
Exome Variant ServerZG16B
ExAC (Exome Aggregation Consortium)ZG16B (select the gene name)
Genetic variants : HAPMAP124220
Genomic Variants (DGV)ZG16B [DGVbeta]
DECIPHERZG16B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZG16B 
Mutations
ICGC Data PortalZG16B 
TCGA Data PortalZG16B 
Broad Tumor PortalZG16B
OASIS PortalZG16B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZG16B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZG16B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZG16B
DgiDB (Drug Gene Interaction Database)ZG16B
DoCM (Curated mutations)ZG16B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZG16B (select a term)
intoGenZG16B
Cancer3DZG16B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZG16B
Genetic Testing Registry ZG16B
NextProtQ96DA0 [Medical]
TSGene124220
GENETestsZG16B
Target ValidationZG16B
Huge Navigator ZG16B [HugePedia]
snp3D : Map Gene to Disease124220
BioCentury BCIQZG16B
ClinGenZG16B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124220
Chemical/Pharm GKB GenePA164727732
Clinical trialZG16B
Miscellaneous
canSAR (ICR)ZG16B (select the gene name)
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZG16B
EVEXZG16B
GoPubMedZG16B
iHOPZG16B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:39:00 CEST 2017

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