Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZGLP1 (zinc finger, GATA-like protein 1)

Identity

Alias_symbol (synonym)GLP1
GLP-1
GATAD3
Other alias
HGNC (Hugo) ZGLP1
LocusID (NCBI) 100125288
Atlas_Id 50584
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 10415479 and ends at 10420233 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
DNM2 (19p13.2) / ZGLP1 (19p13.2)PPP6R1 (19q13.42) / ZGLP1 (19p13.2)DNM2 19p13.2 / ZGLP1 19p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZGLP1   37245
Cards
Entrez_Gene (NCBI)ZGLP1  100125288  zinc finger, GATA-like protein 1
AliasesGATAD3; GLP-1; GLP1
GeneCards (Weizmann)ZGLP1
Ensembl hg19 (Hinxton)ENSG00000220201 [Gene_View]  chr19:10415479-10420233 [Contig_View]  ZGLP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000220201 [Gene_View]  chr19:10415479-10420233 [Contig_View]  ZGLP1 [Vega]
ICGC DataPortalENSG00000220201
TCGA cBioPortalZGLP1
AceView (NCBI)ZGLP1
Genatlas (Paris)ZGLP1
WikiGenes100125288
SOURCE (Princeton)ZGLP1
Genetics Home Reference (NIH)ZGLP1
Genomic and cartography
GoldenPath hg19 (UCSC)ZGLP1  -     chr19:10415479-10420233 -  19p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZGLP1  -     19p13.2   [Description]    (hg38-Dec_2013)
EnsemblZGLP1 - 19p13.2 [CytoView hg19]  ZGLP1 - 19p13.2 [CytoView hg38]
Mapping of homologs : NCBIZGLP1 [Mapview hg19]  ZGLP1 [Mapview hg38]
OMIM611639   
Gene and transcription
Genbank (Entrez)AK096830 BC029904 BC044225 CK826281
RefSeq transcript (Entrez)NM_001103167
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011295 NW_004929414
Consensus coding sequences : CCDS (NCBI)ZGLP1
Cluster EST : UnigeneHs.709296 [ NCBI ]
CGAP (NCI)Hs.709296
Alternative Splicing GalleryENSG00000220201
Gene ExpressionZGLP1 [ NCBI-GEO ]   ZGLP1 [ EBI - ARRAY_EXPRESS ]   ZGLP1 [ SEEK ]   ZGLP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZGLP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100125288
GTEX Portal (Tissue expression)ZGLP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C6A0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C6A0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C6A0
Splice isoforms : SwissVarP0C6A0
PhosPhoSitePlusP0C6A0
Domaine pattern : Prosite (Expaxy)GATA_ZN_FINGER_2 (PS50114)   
Domains : Interpro (EBI)Znf_GATA    Znf_NHR/GATA   
Domain families : Pfam (Sanger)GATA (PF00320)   
Domain families : Pfam (NCBI)pfam00320   
Domain families : Smart (EMBL)ZnF_GATA (SM00401)  
Conserved Domain (NCBI)ZGLP1
DMDM Disease mutations100125288
Blocks (Seattle)ZGLP1
SuperfamilyP0C6A0
Human Protein AtlasENSG00000220201
Peptide AtlasP0C6A0
IPIIPI00643174   IPI00892638   
Protein Interaction databases
DIP (DOE-UCLA)P0C6A0
IntAct (EBI)P0C6A0
FunCoupENSG00000220201
BioGRIDZGLP1
STRING (EMBL)ZGLP1
ZODIACZGLP1
Ontologies - Pathways
QuickGOP0C6A0
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  nucleus  transcription factor complex  transcription from RNA polymerase II promoter  multicellular organism development  spermatogenesis  zinc ion binding  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  oocyte development  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II transcription factor binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  nucleus  transcription factor complex  transcription from RNA polymerase II promoter  multicellular organism development  spermatogenesis  zinc ion binding  cell differentiation  positive regulation of transcription from RNA polymerase II promoter  oocyte development  
NDEx NetworkZGLP1
Atlas of Cancer Signalling NetworkZGLP1
Wikipedia pathwaysZGLP1
Orthology - Evolution
OrthoDB100125288
GeneTree (enSembl)ENSG00000220201
Phylogenetic Trees/Animal Genes : TreeFamZGLP1
HOVERGENP0C6A0
HOGENOMP0C6A0
Homologs : HomoloGeneZGLP1
Homology/Alignments : Family Browser (UCSC)ZGLP1
Gene fusions - Rearrangements
Fusion : MitelmanDNM2/ZGLP1 [19p13.2/19p13.2]  [t(19;19)(p13;p13)]  
Fusion: TCGADNM2 19p13.2 ZGLP1 19p13.2 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZGLP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZGLP1
dbVarZGLP1
ClinVarZGLP1
1000_GenomesZGLP1 
Exome Variant ServerZGLP1
ExAC (Exome Aggregation Consortium)ZGLP1 (select the gene name)
Genetic variants : HAPMAP100125288
Genomic Variants (DGV)ZGLP1 [DGVbeta]
DECIPHER (Syndromes)19:10415479-10420233  ENSG00000220201
CONAN: Copy Number AnalysisZGLP1 
Mutations
ICGC Data PortalZGLP1 
TCGA Data PortalZGLP1 
Broad Tumor PortalZGLP1
OASIS PortalZGLP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZGLP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZGLP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZGLP1
DgiDB (Drug Gene Interaction Database)ZGLP1
DoCM (Curated mutations)ZGLP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZGLP1 (select a term)
intoGenZGLP1
Cancer3DZGLP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611639   
Orphanet
MedgenZGLP1
Genetic Testing Registry ZGLP1
NextProtP0C6A0 [Medical]
TSGene100125288
GENETestsZGLP1
Huge Navigator ZGLP1 [HugePedia]
snp3D : Map Gene to Disease100125288
BioCentury BCIQZGLP1
ClinGenZGLP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100125288
Chemical/Pharm GKB GenePA165394820
Clinical trialZGLP1
Miscellaneous
canSAR (ICR)ZGLP1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZGLP1
EVEXZGLP1
GoPubMedZGLP1
iHOPZGLP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:51 CET 2017

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