ZGPAT (zinc finger CCCH-type and G-patch domain containing)

2012-12-01  

Identity

HGNC
ZGPAT
LOCATION
20q13.33
LOCUSID
84619
ALIAS
GPATC6,GPATCH6,KIAA1847,ZC3H9,ZC3HDC9,ZIP
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 84619
HGNC: 15948
Ensembl: ENSG00000197114

Variants:

dbSNP: 84619
ClinVar: 84619
TCGA: ENSG00000197114
COSMIC: ZGPAT

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000197114ENST00000328969Q8N5A5
ENSG00000197114ENST00000355969Q8N5A5
ENSG00000197114ENST00000355969A0A0S2Z5X3
ENSG00000197114ENST00000357119Q8N5A5
ENSG00000197114ENST00000369967Q8N5A5
ENSG00000197114ENST00000369967A0A0S2Z5X3
ENSG00000197114ENST00000431125X6RGY1
ENSG00000197114ENST00000448100Q8N5A5
ENSG00000197114ENST00000448100A0A0S2Z5X3

Expression (GTEx)

0
10
20
30
40
50
60
70
80
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

References

Pubmed IDYearTitleCitations
288780142017Identification of a 35S U4/U6.U5 tri-small nuclear ribonucleoprotein (tri-snRNP) complex intermediate in spliceosome assembly.10
288780142017Identification of a 35S U4/U6.U5 tri-small nuclear ribonucleoprotein (tri-snRNP) complex intermediate in spliceosome assembly.10
202337182010sZIP, an alternative splice variant of ZIP, antagonizes transcription repression and growth inhibition by ZIP.7
205495152010Genome-wide searching of rare genetic variants in WTCCC data.31
202337182010sZIP, an alternative splice variant of ZIP, antagonizes transcription repression and growth inhibition by ZIP.7
205495152010Genome-wide searching of rare genetic variants in WTCCC data.31
196231682009Investigation of reported associations between the 20q13 and 21q22 loci and pediatric-onset Crohn's disease in Canadian children.16
196231682009Investigation of reported associations between the 20q13 and 21q22 loci and pediatric-onset Crohn's disease in Canadian children.16

Citation

Dessen P

ZGPAT (zinc finger CCCH-type and G-patch domain containing)

Atlas Genet Cytogenet Oncol Haematol. 2012-12-01

Online version: http://atlasgeneticsoncology.org/gene/53120/zgpat