Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZGPAT (zinc finger CCCH-type and G-patch domain containing)

Identity

Alias_namesKIAA1847
KIAA1847
zinc finger CCCH-type with G-patch domain
Alias_symbol (synonym)dJ583P15.3
MGC44880
FLJ14972
ZC3HDC9
ZC3H9
GPATC6
GPATCH6
ZIP
Other alias
HGNC (Hugo) ZGPAT
LocusID (NCBI) 84619
Atlas_Id 53120
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 62338794 and ends at 62367494 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARHGAP21 (10p12.1) / ZGPAT (20q13.33)SF3B2 (11q13.1) / ZGPAT (20q13.33)TPD52L2 (20q13.33) / ZGPAT (20q13.33)
ZGPAT (20q13.33) / CNBD2 (20q11.23)ZGPAT (20q13.33) / FAM171A1 (10p13)ZGPAT (20q13.33) / RTEL1 (20q13.33)
ZGPAT 20q13.33 C20orf152

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZGPAT   15948
Cards
Entrez_Gene (NCBI)ZGPAT  84619  zinc finger CCCH-type and G-patch domain containing
AliasesGPATC6; GPATCH6; KIAA1847; ZC3H9; 
ZC3HDC9; ZIP
GeneCards (Weizmann)ZGPAT
Ensembl hg19 (Hinxton)ENSG00000197114 [Gene_View]  chr20:62338794-62367494 [Contig_View]  ZGPAT [Vega]
Ensembl hg38 (Hinxton)ENSG00000197114 [Gene_View]  chr20:62338794-62367494 [Contig_View]  ZGPAT [Vega]
ICGC DataPortalENSG00000197114
TCGA cBioPortalZGPAT
AceView (NCBI)ZGPAT
Genatlas (Paris)ZGPAT
WikiGenes84619
SOURCE (Princeton)ZGPAT
Genetics Home Reference (NIH)ZGPAT
Genomic and cartography
GoldenPath hg19 (UCSC)ZGPAT  -     chr20:62338794-62367494 +  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZGPAT  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblZGPAT - 20q13.33 [CytoView hg19]  ZGPAT - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIZGPAT [Mapview hg19]  ZGPAT [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058750 AK027878 AK074961 AK307368 AK314726
RefSeq transcript (Entrez)NM_001083113 NM_001195653 NM_001195654 NM_032527 NM_181484 NM_181485
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929419
Consensus coding sequences : CCDS (NCBI)ZGPAT
Cluster EST : UnigeneHs.590868 [ NCBI ]
CGAP (NCI)Hs.590868
Alternative Splicing GalleryENSG00000197114
Gene ExpressionZGPAT [ NCBI-GEO ]   ZGPAT [ EBI - ARRAY_EXPRESS ]   ZGPAT [ SEEK ]   ZGPAT [ MEM ]
Gene Expression Viewer (FireBrowse)ZGPAT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84619
GTEX Portal (Tissue expression)ZGPAT
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5A5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5A5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5A5
Splice isoforms : SwissVarQ8N5A5
PhosPhoSitePlusQ8N5A5
Domaine pattern : Prosite (Expaxy)G_PATCH (PS50174)    ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)G_patch_dom    Znf_CCCH   
Domain families : Pfam (Sanger)G-patch (PF01585)   
Domain families : Pfam (NCBI)pfam01585   
Domain families : Smart (EMBL)G_patch (SM00443)  ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZGPAT
DMDM Disease mutations84619
Blocks (Seattle)ZGPAT
PDB (SRS)4II1   
PDB (PDBSum)4II1   
PDB (IMB)4II1   
PDB (RSDB)4II1   
Structural Biology KnowledgeBase4II1   
SCOP (Structural Classification of Proteins)4II1   
CATH (Classification of proteins structures)4II1   
SuperfamilyQ8N5A5
Human Protein AtlasENSG00000197114
Peptide AtlasQ8N5A5
HPRD15736
IPIIPI00553175   IPI00641397   IPI00719070   IPI00375395   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5A5
IntAct (EBI)Q8N5A5
FunCoupENSG00000197114
BioGRIDZGPAT
STRING (EMBL)ZGPAT
ZODIACZGPAT
Ontologies - Pathways
QuickGOQ8N5A5
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  negative regulation of epidermal growth factor-activated receptor activity  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  protein binding  nucleus  transcription, DNA-templated  negative regulation of epidermal growth factor-activated receptor activity  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZGPAT
Atlas of Cancer Signalling NetworkZGPAT
Wikipedia pathwaysZGPAT
Orthology - Evolution
OrthoDB84619
GeneTree (enSembl)ENSG00000197114
Phylogenetic Trees/Animal Genes : TreeFamZGPAT
HOVERGENQ8N5A5
HOGENOMQ8N5A5
Homologs : HomoloGeneZGPAT
Homology/Alignments : Family Browser (UCSC)ZGPAT
Gene fusions - Rearrangements
Fusion : MitelmanZGPAT/CNBD2 [20q13.33/20q11.23]  
Fusion: TCGAZGPAT 20q13.33 C20orf152 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZGPAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZGPAT
dbVarZGPAT
ClinVarZGPAT
1000_GenomesZGPAT 
Exome Variant ServerZGPAT
ExAC (Exome Aggregation Consortium)ZGPAT (select the gene name)
Genetic variants : HAPMAP84619
Genomic Variants (DGV)ZGPAT [DGVbeta]
DECIPHER (Syndromes)20:62338794-62367494  ENSG00000197114
CONAN: Copy Number AnalysisZGPAT 
Mutations
ICGC Data PortalZGPAT 
TCGA Data PortalZGPAT 
Broad Tumor PortalZGPAT
OASIS PortalZGPAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZGPAT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZGPAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZGPAT
DgiDB (Drug Gene Interaction Database)ZGPAT
DoCM (Curated mutations)ZGPAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZGPAT (select a term)
intoGenZGPAT
Cancer3DZGPAT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZGPAT
Genetic Testing Registry ZGPAT
NextProtQ8N5A5 [Medical]
TSGene84619
GENETestsZGPAT
Huge Navigator ZGPAT [HugePedia]
snp3D : Map Gene to Disease84619
BioCentury BCIQZGPAT
ClinGenZGPAT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84619
Chemical/Pharm GKB GenePA134881248
Clinical trialZGPAT
Miscellaneous
canSAR (ICR)ZGPAT (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZGPAT
EVEXZGPAT
GoPubMedZGPAT
iHOPZGPAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:51 CET 2017

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