Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZGPAT (zinc finger CCCH-type and G-patch domain containing)

Identity

Alias (NCBI)GPATC6
GPATCH6
KIAA1847
ZC3H9
ZC3HDC9
ZIP
HGNC (Hugo) ZGPAT
HGNC Alias symbdJ583P15.3
MGC44880
FLJ14972
ZC3HDC9
ZC3H9
GPATC6
GPATCH6
ZIP
HGNC Previous nameKIAA1847
HGNC Previous nameKIAA1847
 zinc finger CCCH-type with G-patch domain
LocusID (NCBI) 84619
Atlas_Id 53120
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63708028 and ends at 63736142 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARHGAP21 (10p12.1) / ZGPAT (20q13.33)SF3B2 (11q13.1) / ZGPAT (20q13.33)TPD52L2 (20q13.33) / ZGPAT (20q13.33)
ZGPAT (20q13.33) / CNBD2 (20q11.23)ZGPAT (20q13.33) / FAM171A1 (10p13)ZGPAT (20q13.33) / RTEL1 (20q13.33)
ZGPAT 20q13.33 C20orf152

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ZGPAT   15948
Cards
Entrez_Gene (NCBI)ZGPAT    zinc finger CCCH-type and G-patch domain containing
AliasesGPATC6; GPATCH6; KIAA1847; ZC3H9; 
ZC3HDC9; ZIP
GeneCards (Weizmann)ZGPAT
Ensembl hg19 (Hinxton)ENSG00000197114 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197114 [Gene_View]  ENSG00000197114 [Sequence]  chr20:63708028-63736142 [Contig_View]  ZGPAT [Vega]
ICGC DataPortalENSG00000197114
TCGA cBioPortalZGPAT
AceView (NCBI)ZGPAT
Genatlas (Paris)ZGPAT
SOURCE (Princeton)ZGPAT
Genetics Home Reference (NIH)ZGPAT
Genomic and cartography
GoldenPath hg38 (UCSC)ZGPAT  -     chr20:63708028-63736142 +  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZGPAT  -     20q13.33   [Description]    (hg19-Feb_2009)
GoldenPathZGPAT - 20q13.33 [CytoView hg19]  ZGPAT - 20q13.33 [CytoView hg38]
ImmunoBaseENSG00000197114
Genome Data Viewer NCBIZGPAT [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AB058750 AK027878 AK074961 AK307368 AK314726
RefSeq transcript (Entrez)NM_001083113 NM_001195653 NM_001195654 NM_032527 NM_181484 NM_181485
Consensus coding sequences : CCDS (NCBI)ZGPAT
Gene ExpressionZGPAT [ NCBI-GEO ]   ZGPAT [ EBI - ARRAY_EXPRESS ]   ZGPAT [ SEEK ]   ZGPAT [ MEM ]
Gene Expression Viewer (FireBrowse)ZGPAT [ Firebrowse - Broad ]
GenevisibleExpression of ZGPAT in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84619
GTEX Portal (Tissue expression)ZGPAT
Human Protein AtlasENSG00000197114-ZGPAT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZGPAT
Human Protein Atlas [tissue]ENSG00000197114-ZGPAT [tissue]
HPRD15736
Protein Interaction databases
BioGRIDZGPAT
STRING (EMBL)ZGPAT
ZODIACZGPAT
Ontologies - Pathways
Litterature
PubMed49 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZGPAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:39:01 CEST 2021

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