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ZGRF1 (zinc finger GRF-type containing 1)

Identity

Alias_namesC4orf21
chromosome 4 open reading frame 21
Alias_symbol (synonym)FLJ11331
Other alias
HGNC (Hugo) ZGRF1
LocusID (NCBI) 55345
Atlas_Id 40592
Location 4q25  [Link to chromosome band 4q25]
Location_base_pair Starts at 113460489 and ends at 113558151 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZGRF1   25654
Cards
Entrez_Gene (NCBI)ZGRF1  55345  zinc finger GRF-type containing 1
AliasesC4orf21
GeneCards (Weizmann)ZGRF1
Ensembl hg19 (Hinxton)ENSG00000138658 [Gene_View]  chr4:113460489-113558151 [Contig_View]  ZGRF1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000138658 [Gene_View]  chr4:113460489-113558151 [Contig_View]  ZGRF1 [Vega]
ICGC DataPortalENSG00000138658
TCGA cBioPortalZGRF1
AceView (NCBI)ZGRF1
Genatlas (Paris)ZGRF1
WikiGenes55345
SOURCE (Princeton)ZGRF1
Genetics Home Reference (NIH)ZGRF1
Genomic and cartography
GoldenPath hg19 (UCSC)ZGRF1  -     chr4:113460489-113558151 -  4q25   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZGRF1  -     4q25   [Description]    (hg38-Dec_2013)
EnsemblZGRF1 - 4q25 [CytoView hg19]  ZGRF1 - 4q25 [CytoView hg38]
Mapping of homologs : NCBIZGRF1 [Mapview hg19]  ZGRF1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002193 AK090556 AK126054 AK299831 AK302613
RefSeq transcript (Entrez)NM_001099776 NM_018392 NM_138698
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)ZGRF1
Cluster EST : UnigeneHs.713663 [ NCBI ]
CGAP (NCI)Hs.713663
Alternative Splicing GalleryENSG00000138658
Gene ExpressionZGRF1 [ NCBI-GEO ]   ZGRF1 [ EBI - ARRAY_EXPRESS ]   ZGRF1 [ SEEK ]   ZGRF1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZGRF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55345
GTEX Portal (Tissue expression)ZGRF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86YA3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86YA3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86YA3
Splice isoforms : SwissVarQ86YA3
PhosPhoSitePlusQ86YA3
Domains : Interpro (EBI)DUF2439    P-loop_NTPase    Znf_GRF   
Domain families : Pfam (Sanger)DUF2439 (PF10382)    zf-GRF (PF06839)   
Domain families : Pfam (NCBI)pfam10382    pfam06839   
Conserved Domain (NCBI)ZGRF1
DMDM Disease mutations55345
Blocks (Seattle)ZGRF1
SuperfamilyQ86YA3
Human Protein AtlasENSG00000138658
Peptide AtlasQ86YA3
HPRD08562
IPIIPI00880006   IPI00943981   IPI00165327   IPI00910161   IPI00300207   IPI00966061   IPI00967128   IPI00969203   IPI00965165   IPI00964350   
Protein Interaction databases
DIP (DOE-UCLA)Q86YA3
IntAct (EBI)Q86YA3
FunCoupENSG00000138658
BioGRIDZGRF1
STRING (EMBL)ZGRF1
ZODIACZGRF1
Ontologies - Pathways
QuickGOQ86YA3
Ontology : AmiGOzinc ion binding  integral component of membrane  
Ontology : EGO-EBIzinc ion binding  integral component of membrane  
NDEx NetworkZGRF1
Atlas of Cancer Signalling NetworkZGRF1
Wikipedia pathwaysZGRF1
Orthology - Evolution
OrthoDB55345
GeneTree (enSembl)ENSG00000138658
Phylogenetic Trees/Animal Genes : TreeFamZGRF1
HOVERGENQ86YA3
HOGENOMQ86YA3
Homologs : HomoloGeneZGRF1
Homology/Alignments : Family Browser (UCSC)ZGRF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZGRF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZGRF1
dbVarZGRF1
ClinVarZGRF1
1000_GenomesZGRF1 
Exome Variant ServerZGRF1
ExAC (Exome Aggregation Consortium)ZGRF1 (select the gene name)
Genetic variants : HAPMAP55345
Genomic Variants (DGV)ZGRF1 [DGVbeta]
DECIPHER (Syndromes)4:113460489-113558151  ENSG00000138658
CONAN: Copy Number AnalysisZGRF1 
Mutations
ICGC Data PortalZGRF1 
TCGA Data PortalZGRF1 
Broad Tumor PortalZGRF1
OASIS PortalZGRF1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZGRF1
BioMutasearch ZGRF1
DgiDB (Drug Gene Interaction Database)ZGRF1
DoCM (Curated mutations)ZGRF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZGRF1 (select a term)
intoGenZGRF1
Cancer3DZGRF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZGRF1
Genetic Testing Registry ZGRF1
NextProtQ86YA3 [Medical]
TSGene55345
GENETestsZGRF1
Huge Navigator ZGRF1 [HugePedia]
snp3D : Map Gene to Disease55345
BioCentury BCIQZGRF1
ClinGenZGRF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55345
Chemical/Pharm GKB GenePA144596502
Clinical trialZGRF1
Miscellaneous
canSAR (ICR)ZGRF1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZGRF1
EVEXZGRF1
GoPubMedZGRF1
iHOPZGRF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:35 CEST 2017

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