Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZIC1 (Zic family member 1)

Identity

Other namesZIC
ZNF201
HGNC (Hugo) ZIC1
LocusID (NCBI) 7545
Location 3q24
Location_base_pair Starts at 147127181 and ends at 147134506 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZIC1   12872
Cards
Entrez_Gene (NCBI)ZIC1  7545  Zic family member 1
GeneCards (Weizmann)ZIC1
Ensembl (Hinxton)ENSG00000152977 [Gene_View]  chr3:147127181-147134506 [Contig_View]  ZIC1 [Vega]
ICGC DataPortalENSG00000152977
AceView (NCBI)ZIC1
Genatlas (Paris)ZIC1
WikiGenes7545
SOURCE (Princeton)NM_003412
Genomic and cartography
GoldenPath (UCSC)ZIC1  -  3q24   chr3:147127181-147134506 +  3q24   [Description]    (hg19-Feb_2009)
EnsemblZIC1 - 3q24 [CytoView]
Mapping of homologs : NCBIZIC1 [Mapview]
OMIM600470   
Gene and transcription
Genbank (Entrez)BC104848 BC104850 BF920299 U79264
RefSeq transcript (Entrez)NM_003412
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_015886 NT_005612 NW_001838884 NW_004929311
Consensus coding sequences : CCDS (NCBI)ZIC1
Cluster EST : UnigeneHs.647962 [ NCBI ]
CGAP (NCI)Hs.647962
Alternative Splicing : Fast-db (Paris)GSHG0021233
Alternative Splicing GalleryENSG00000152977
Gene ExpressionZIC1 [ NCBI-GEO ]     ZIC1 [ SEEK ]   ZIC1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15915 (Uniprot)
NextProtQ15915  [Medical]
With graphics : InterProQ15915
Splice isoforms : SwissVarQ15915 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ15915
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations7545
Blocks (Seattle)Q15915
Human Protein AtlasENSG00000152977
Peptide AtlasQ15915
HPRD02718
IPIIPI00302870   IPI00745740   IPI00790102   
Protein Interaction databases
DIP (DOE-UCLA)Q15915
IntAct (EBI)Q15915
FunCoupENSG00000152977
BioGRIDZIC1
InParanoidQ15915
Interologous Interaction database Q15915
IntegromeDBZIC1
STRING (EMBL)ZIC1
Ontologies - Pathways
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  pattern specification process  brain development  adult walking behavior  regulation of smoothened signaling pathway  spinal cord development  cell differentiation  positive regulation of protein import into nucleus  inner ear morphogenesis  positive regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  pattern specification process  brain development  adult walking behavior  regulation of smoothened signaling pathway  spinal cord development  cell differentiation  positive regulation of protein import into nucleus  inner ear morphogenesis  positive regulation of transcription, DNA-templated  metal ion binding  
Protein Interaction DatabaseZIC1
Wikipedia pathwaysZIC1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZIC1
SNP (GeneSNP Utah)ZIC1
SNP : HGBaseZIC1
Genetic variants : HAPMAPZIC1
1000_GenomesZIC1 
ICGC programENSG00000152977 
CONAN: Copy Number AnalysisZIC1 
Somatic Mutations in Cancer : COSMICZIC1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDZIC1
OMIM600470   
MedgenZIC1
GENETestsZIC1
Disease Genetic AssociationZIC1
Huge Navigator ZIC1 [HugePedia]  ZIC1 [HugeCancerGEM]
Genomic VariantsZIC1  ZIC1 [DGVbeta]
Exome VariantZIC1
dbVarZIC1
ClinVarZIC1
snp3D : Map Gene to Disease7545
General knowledge
Homologs : HomoloGeneZIC1
Homology/Alignments : Family Browser (UCSC)ZIC1
Phylogenetic Trees/Animal Genes : TreeFamZIC1
Chemical/Protein Interactions : CTD7545
Chemical/Pharm GKB GenePA37461
Clinical trialZIC1
Cancer Resource (Charite)ENSG00000152977
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineZIC1
iHOPZIC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 13:27:11 CEST 2014

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