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ZIC1 (Zic family member 1)

Identity

Other namesCRS6
ZIC
ZNF201
HGNC (Hugo) ZIC1
LocusID (NCBI) 7545
Atlas_Id 42867
Location 3q24
Location_base_pair Starts at 147127181 and ends at 147134506 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZIC1 (3q24) / AKT2 (19q13.2)ZIC1 (3q24) / ZIC1 (3q24)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZIC1   12872
Cards
Entrez_Gene (NCBI)ZIC1  7545  Zic family member 1
GeneCards (Weizmann)ZIC1
Ensembl hg19 (Hinxton)ENSG00000152977 [Gene_View]  chr3:147127181-147134506 [Contig_View]  ZIC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000152977 [Gene_View]  chr3:147127181-147134506 [Contig_View]  ZIC1 [Vega]
ICGC DataPortalENSG00000152977
TCGA cBioPortalZIC1
AceView (NCBI)ZIC1
Genatlas (Paris)ZIC1
WikiGenes7545
SOURCE (Princeton)ZIC1
Genomic and cartography
GoldenPath hg19 (UCSC)ZIC1  -     chr3:147127181-147134506 +  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZIC1  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblZIC1 - 3q24 [CytoView hg19]  ZIC1 - 3q24 [CytoView hg38]
Mapping of homologs : NCBIZIC1 [Mapview hg19]  ZIC1 [Mapview hg38]
OMIM600470   616602   
Gene and transcription
Genbank (Entrez)BC104848 BC104850 BF920299 U79264
RefSeq transcript (Entrez)NM_003412
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_015886 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ZIC1
Cluster EST : UnigeneHs.647962 [ NCBI ]
CGAP (NCI)Hs.647962
Alternative Splicing : Fast-db (Paris)GSHG0021233
Alternative Splicing GalleryENSG00000152977
Gene ExpressionZIC1 [ NCBI-GEO ]   ZIC1 [ EBI - ARRAY_EXPRESS ]   ZIC1 [ SEEK ]   ZIC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZIC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)7545
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15915 (Uniprot)
NextProtQ15915  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15915
Splice isoforms : SwissVarQ15915 (Swissvar)
PhosPhoSitePlusQ15915
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations7545
Blocks (Seattle)ZIC1
SuperfamilyQ15915
Human Protein AtlasENSG00000152977
Peptide AtlasQ15915
HPRD02718
IPIIPI00302870   IPI00745740   IPI00790102   
Protein Interaction databases
DIP (DOE-UCLA)Q15915
IntAct (EBI)Q15915
FunCoupENSG00000152977
BioGRIDZIC1
STRING (EMBL)ZIC1
ZODIACZIC1
Ontologies - Pathways
QuickGOQ15915
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytoplasm  transcription from RNA polymerase II promoter  pattern specification process  brain development  adult walking behavior  regulation of smoothened signaling pathway  spinal cord development  cell differentiation  positive regulation of protein import into nucleus  inner ear morphogenesis  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcription factor activity, sequence-specific DNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytoplasm  transcription from RNA polymerase II promoter  pattern specification process  brain development  adult walking behavior  regulation of smoothened signaling pathway  spinal cord development  cell differentiation  positive regulation of protein import into nucleus  inner ear morphogenesis  positive regulation of transcription, DNA-templated  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx Network
Atlas of Cancer Signalling NetworkZIC1
Wikipedia pathwaysZIC1
Orthology - Evolution
OrthoDB7545
GeneTree (enSembl)ENSG00000152977
Phylogenetic Trees/Animal Genes : TreeFamZIC1
Homologs : HomoloGeneZIC1
Homology/Alignments : Family Browser (UCSC)ZIC1
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerZIC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZIC1
dbVarZIC1
ClinVarZIC1
1000_GenomesZIC1 
Exome Variant ServerZIC1
ExAC (Exome Aggregation Consortium)ZIC1 (select the gene name)
SNP (GeneSNP Utah)ZIC1
SNP : HGBaseZIC1
Genetic variants : HAPMAPZIC1
Genomic Variants (DGV)ZIC1 [DGVbeta]
Mutations
ICGC Data PortalZIC1 
TCGA Data PortalZIC1 
Broad Tumor PortalZIC1
OASIS PortalZIC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZIC1 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZIC1
DgiDB (Drug Gene Interaction Database)ZIC1
DoCM (Curated mutations)ZIC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZIC1 (select a term)
intoGenZIC1
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:147127181-147134506
CONAN: Copy Number AnalysisZIC1 
Mutations and Diseases : HGMDZIC1
OMIM600470    616602   
MedgenZIC1
Genetic Testing Registry ZIC1
NextProtQ15915 [Medical]
TSGene7545
GENETestsZIC1
Huge Navigator ZIC1 [HugePedia]  ZIC1 [HugeCancerGEM]
snp3D : Map Gene to Disease7545
BioCentury BCIQZIC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7545
Chemical/Pharm GKB GenePA37461
Clinical trialZIC1
Miscellaneous
canSAR (ICR)ZIC1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZIC1
GoPubMedZIC1
iHOPZIC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Apr 16 18:10:37 CEST 2016

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