| Nomenclature | | HGNC (Hugo) | ZIC2 12873 |
| Cards | | Entrez_Gene (NCBI) | ZIC2 7546 Zic family member 2 |
| GeneCards (Weizmann) | ZIC2 |
| Ensembl (Hinxton) | ENSG00000043355 [Gene_View] chr13:100634026-100639019 [Contig_View] ZIC2 [Vega] |
| ICGC DataPortal | ENSG00000043355 |
| cBioPortal | ZIC2 |
| AceView (NCBI) | ZIC2 |
| Genatlas (Paris) | ZIC2 |
| WikiGenes | 7546 |
| SOURCE (Princeton) | NM_007129 |
| Genomic and cartography | | GoldenPath (UCSC) | ZIC2 - 13q32.3 chr13:100634026-100639019 + 13q32.3 [Description] (hg19-Feb_2009) |
| Ensembl | ZIC2 - 13q32.3 [CytoView] |
| Mapping of homologs : NCBI | ZIC2 [Mapview] |
| OMIM | 603073 609637 |
| Gene and transcription |
| Genbank (Entrez) | AF104902 AF188733 AF193855 AF339806 BC172274 |
| RefSeq transcript (Entrez) | NM_007129 |
| RefSeq genomic (Entrez) | AC_000145 NC_000013 NC_018924 NG_007085 NT_009952 NW_001838084 NW_004929389 |
| Consensus coding sequences : CCDS (NCBI) | ZIC2 |
| Cluster EST : Unigene | Hs.653700 [ NCBI ] |
| CGAP (NCI) | Hs.653700 |
| Alternative Splicing : Fast-db (Paris) | GSHG0008259 |
| Alternative Splicing Gallery | ENSG00000043355 |
| Gene Expression | ZIC2 [ NCBI-GEO ] ZIC2 [ SEEK ] ZIC2 [ MEM ] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | O95409 (Uniprot) |
| NextProt | O95409 [Medical] |
| With graphics : InterPro | O95409 |
| Splice isoforms : SwissVar | O95409 (Swissvar) |
| Domaine pattern : Prosite (Expaxy) | ZINC_FINGER_C2H2_1 (PS00028) ZINC_FINGER_C2H2_2 (PS50157) |
| Domains : Interpro (EBI) | Znf_C2H2 [organisation] Znf_C2H2-like [organisation] Znf_C2H2/integrase_DNA-bd [organisation] |
| Related proteins : CluSTr | O95409 |
| Domain families : Pfam (Sanger) | zf-C2H2 (PF00096) |
| Domain families : Pfam (NCBI) | pfam00096 |
| Domain families : Smart (EMBL) | ZnF_C2H2 (SM00355) |
| DMDM Disease mutations | 7546 |
| Blocks (Seattle) | O95409 |
| Human Protein Atlas | ENSG00000043355 [gene] [tissue] [antibody] [cell] [cancer] |
| Peptide Atlas | O95409 |
| HPRD | 04353 |
| IPI | IPI00030652 IPI00908526 IPI00872334 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | O95409 |
| IntAct (EBI) | O95409 |
| FunCoup | ENSG00000043355 |
| BioGRID | ZIC2 |
| InParanoid | O95409 |
| Interologous Interaction database | O95409 |
| IntegromeDB | ZIC2 |
| STRING (EMBL) | ZIC2 |
| Ontologies - Pathways | | Ontology : AmiGO | neural tube closure DNA binding sequence-specific DNA binding transcription factor activity nucleus cytoplasm transcription, DNA-templated brain development visual perception retinal ganglion cell axon guidance chromatin DNA binding negative regulation of transcription, DNA-dependent positive regulation of transcription, DNA-dependent metal ion binding developmental pigmentation positive regulation of sequence-specific DNA binding transcription factor activity |
| Ontology : EGO-EBI | neural tube closure DNA binding sequence-specific DNA binding transcription factor activity nucleus cytoplasm transcription, DNA-templated brain development visual perception retinal ganglion cell axon guidance chromatin DNA binding negative regulation of transcription, DNA-dependent positive regulation of transcription, DNA-dependent metal ion binding developmental pigmentation positive regulation of sequence-specific DNA binding transcription factor activity |
| Pathways : KEGG | Hedgehog signaling pathway |
| Protein Interaction Database | ZIC2 |
| Wikipedia pathways | ZIC2 |
| Gene fusion - rearrangments | | Polymorphisms : SNP, mutations, diseases | | SNP Single Nucleotide Polymorphism (NCBI) | ZIC2 |
| snp3D : Map Gene to Disease | 7546 |
| SNP (GeneSNP Utah) | ZIC2 |
| SNP : HGBase | ZIC2 |
| Genetic variants : HAPMAP | ZIC2 |
| Exome Variant | ZIC2 |
| 1000_Genomes | ZIC2 |
| ICGC program | ENSG00000043355 |
| Somatic Mutations in Cancer : COSMIC | ZIC2 |
| CONAN: Copy Number Analysis | ZIC2 |
| Mutations and Diseases : HGMD | ZIC2 |
| Genomic Variants | ZIC2 ZIC2 [DGVbeta] |
| dbVar | ZIC2 |
| ClinVar | ZIC2 |
| Pred. of missenses | PolyPhen-2 SIFT(SG) SIFT(JCVI) Align-GVGD MutAssessor Mutanalyser |
| Pred. splices | GeneSplicer Human Splicing Finder MaxEntScan |
| Diseases | | OMIM | 603073 609637 |
| Medgen | ZIC2 |
| GENETests | ZIC2 |
| Disease Genetic Association | ZIC2 |
| Huge Navigator |
ZIC2 [HugePedia] ZIC2 [HugeCancerGEM] |
| General knowledge |
|---|
| Homologs : HomoloGene | ZIC2 |
| Homology/Alignments : Family Browser (UCSC) | ZIC2 |
| Phylogenetic Trees/Animal Genes : TreeFam | ZIC2 |
| Chemical/Protein Interactions : CTD | 7546 |
| Chemical/Pharm GKB Gene | PA37462 |
| Clinical trial | ZIC2 |
| Cancer Resource (Charite) | ENSG00000043355 |
| Other databases | | Probes |
|---|
| Litterature | | PubMed | 40 Pubmed reference(s) in Entrez |
| CoreMine | ZIC2 |
| iHOP | ZIC2 |