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ZIC4 (Zic family member 4)

Identity

Other names-
HGNC (Hugo) ZIC4
LocusID (NCBI) 84107
Location 3q24
Location_base_pair Starts at 147103835 and ends at 147122071 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ZIC4   20393
Cards
Entrez_Gene (NCBI)ZIC4  84107  Zic family member 4
GeneCards (Weizmann)ZIC4
Ensembl (Hinxton)ENSG00000174963 [Gene_View]  chr3:147103835-147122071 [Contig_View]  ZIC4 [Vega]
ICGC DataPortalENSG00000174963
AceView (NCBI)ZIC4
Genatlas (Paris)ZIC4
WikiGenes84107
SOURCE (Princeton)NM_001168378 NM_001168379 NM_001243256 NM_032153
Genomic and cartography
GoldenPath (UCSC)ZIC4  -  3q24   chr3:147103835-147122071 -  3q24   [Description]    (hg19-Feb_2009)
EnsemblZIC4 - 3q24 [CytoView]
Mapping of homologs : NCBIZIC4 [Mapview]
OMIM608948   
Gene and transcription
Genbank (Entrez)AF332509 AK056262 AK056394 AK094286 AK124600
RefSeq transcript (Entrez)NM_001168378 NM_001168379 NM_001243256 NM_032153
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NG_009242 NT_005612 NW_001838884 NW_004929311
Consensus coding sequences : CCDS (NCBI)ZIC4
Cluster EST : UnigeneHs.739084 [ NCBI ]
CGAP (NCI)Hs.739084
Alternative Splicing : Fast-db (Paris)GSHG0005624
Alternative Splicing GalleryENSG00000174963
Gene ExpressionZIC4 [ NCBI-GEO ]     ZIC4 [ SEEK ]   ZIC4 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9L1 (Uniprot)
NextProtQ8N9L1  [Medical]
With graphics : InterProQ8N9L1
Splice isoforms : SwissVarQ8N9L1 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrQ8N9L1
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations84107
Blocks (Seattle)Q8N9L1
Human Protein AtlasENSG00000174963
Peptide AtlasQ8N9L1
HPRD12340
IPIIPI00940814   IPI00387173   IPI00445107   IPI00873128   IPI00396030   IPI00953232   IPI00947108   IPI00945479   IPI00946698   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9L1
IntAct (EBI)Q8N9L1
FunCoupENSG00000174963
BioGRIDZIC4
IntegromeDBZIC4
STRING (EMBL)ZIC4
Ontologies - Pathways
QuickGOQ8N9L1
Ontology : AmiGODNA binding  nucleus  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  metal ion binding  
Protein Interaction DatabaseZIC4
Wikipedia pathwaysZIC4
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZIC4
SNP (GeneSNP Utah)ZIC4
SNP : HGBaseZIC4
Genetic variants : HAPMAPZIC4
1000_GenomesZIC4 
ICGC programENSG00000174963 
CONAN: Copy Number AnalysisZIC4 
Somatic Mutations in Cancer : COSMICZIC4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
DECIPHER (Syndromes)3:147103835-147122071
Mutations and Diseases : HGMDZIC4
OMIM608948   
MedgenZIC4
GENETestsZIC4
Disease Genetic AssociationZIC4
Huge Navigator ZIC4 [HugePedia]  ZIC4 [HugeCancerGEM]
Genomic VariantsZIC4  ZIC4 [DGVbeta]
Exome VariantZIC4
dbVarZIC4
ClinVarZIC4
snp3D : Map Gene to Disease84107
General knowledge
Homologs : HomoloGeneZIC4
Homology/Alignments : Family Browser (UCSC)ZIC4
Phylogenetic Trees/Animal Genes : TreeFamZIC4
Chemical/Protein Interactions : CTD84107
Chemical/Pharm GKB GenePA134937175
Clinical trialZIC4
Cancer Resource (Charite)ENSG00000174963
Other databases
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
CoreMineZIC4
GoPubMedZIC4
iHOPZIC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Nov 8 18:06:38 CET 2014

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