Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZIC4 (Zic family member 4)

Identity

Other names-
HGNC (Hugo) ZIC4
LocusID (NCBI) 84107
Atlas_Id 53121
Location 3q24  [Link to chromosome band 3q24]
Location_base_pair Starts at 147103835 and ends at 147122071 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZIC4   20393
Cards
Entrez_Gene (NCBI)ZIC4  84107  Zic family member 4
Aliases
GeneCards (Weizmann)ZIC4
Ensembl hg19 (Hinxton)ENSG00000174963 [Gene_View]  chr3:147103835-147122071 [Contig_View]  ZIC4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000174963 [Gene_View]  chr3:147103835-147122071 [Contig_View]  ZIC4 [Vega]
ICGC DataPortalENSG00000174963
TCGA cBioPortalZIC4
AceView (NCBI)ZIC4
Genatlas (Paris)ZIC4
WikiGenes84107
SOURCE (Princeton)ZIC4
Genomic and cartography
GoldenPath hg19 (UCSC)ZIC4  -     chr3:147103835-147122071 -  3q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZIC4  -     3q24   [Description]    (hg38-Dec_2013)
EnsemblZIC4 - 3q24 [CytoView hg19]  ZIC4 - 3q24 [CytoView hg38]
Mapping of homologs : NCBIZIC4 [Mapview hg19]  ZIC4 [Mapview hg38]
OMIM608948   
Gene and transcription
Genbank (Entrez)AF332509 AK056262 AK056394 AK094286 AK124600
RefSeq transcript (Entrez)NM_001168378 NM_001168379 NM_001243256 NM_032153
RefSeq genomic (Entrez)NC_000003 NC_018914 NG_009242 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ZIC4
Cluster EST : UnigeneHs.739084 [ NCBI ]
CGAP (NCI)Hs.739084
Alternative Splicing GalleryENSG00000174963
Gene ExpressionZIC4 [ NCBI-GEO ]   ZIC4 [ EBI - ARRAY_EXPRESS ]   ZIC4 [ SEEK ]   ZIC4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZIC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84107
GTEX Portal (Tissue expression)ZIC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N9L1 (Uniprot)
NextProtQ8N9L1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N9L1
Splice isoforms : SwissVarQ8N9L1 (Swissvar)
PhosPhoSitePlusQ8N9L1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations84107
Blocks (Seattle)ZIC4
SuperfamilyQ8N9L1
Human Protein AtlasENSG00000174963
Peptide AtlasQ8N9L1
HPRD12340
IPIIPI00940814   IPI00387173   IPI00445107   IPI00873128   IPI00396030   IPI00953232   IPI00947108   IPI00945479   IPI00946698   
Protein Interaction databases
DIP (DOE-UCLA)Q8N9L1
IntAct (EBI)Q8N9L1
FunCoupENSG00000174963
BioGRIDZIC4
STRING (EMBL)ZIC4
ZODIACZIC4
Ontologies - Pathways
QuickGOQ8N9L1
Ontology : AmiGODNA binding  nucleus  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  metal ion binding  
NDEx Network
Atlas of Cancer Signalling NetworkZIC4
Wikipedia pathwaysZIC4
Orthology - Evolution
OrthoDB84107
GeneTree (enSembl)ENSG00000174963
Phylogenetic Trees/Animal Genes : TreeFamZIC4
Homologs : HomoloGeneZIC4
Homology/Alignments : Family Browser (UCSC)ZIC4
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerZIC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZIC4
dbVarZIC4
ClinVarZIC4
1000_GenomesZIC4 
Exome Variant ServerZIC4
ExAC (Exome Aggregation Consortium)ZIC4 (select the gene name)
Genetic variants : HAPMAP84107
Genomic Variants (DGV)ZIC4 [DGVbeta]
Mutations
ICGC Data PortalZIC4 
TCGA Data PortalZIC4 
Broad Tumor PortalZIC4
OASIS PortalZIC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZIC4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZIC4
DgiDB (Drug Gene Interaction Database)ZIC4
DoCM (Curated mutations)ZIC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZIC4 (select a term)
intoGenZIC4
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:147103835-147122071  ENSG00000174963
CONAN: Copy Number AnalysisZIC4 
Mutations and Diseases : HGMDZIC4
OMIM608948   
MedgenZIC4
Genetic Testing Registry ZIC4
NextProtQ8N9L1 [Medical]
TSGene84107
GENETestsZIC4
Huge Navigator ZIC4 [HugePedia]
snp3D : Map Gene to Disease84107
BioCentury BCIQZIC4
ClinGenZIC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84107
Chemical/Pharm GKB GenePA134937175
Clinical trialZIC4
Miscellaneous
canSAR (ICR)ZIC4 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZIC4
EVEXZIC4
GoPubMedZIC4
iHOPZIC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 9 19:28:40 CEST 2016

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