Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZIC5 (Zic family member 5)

Identity

Alias_namesZic family member 5 (odd-paired homolog, Drosophila)
Other alias-
HGNC (Hugo) ZIC5
LocusID (NCBI) 85416
Atlas_Id 75960
Location 13q32.3  [Link to chromosome band 13q32]
Location_base_pair Starts at 99962964 and ends at 99971909 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZIC5   20322
Cards
Entrez_Gene (NCBI)ZIC5  85416  Zic family member 5
Aliases
GeneCards (Weizmann)ZIC5
Ensembl hg19 (Hinxton)ENSG00000139800 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139800 [Gene_View]  chr13:99962964-99971909 [Contig_View]  ZIC5 [Vega]
ICGC DataPortalENSG00000139800
TCGA cBioPortalZIC5
AceView (NCBI)ZIC5
Genatlas (Paris)ZIC5
WikiGenes85416
SOURCE (Princeton)ZIC5
Genetics Home Reference (NIH)ZIC5
Genomic and cartography
GoldenPath hg38 (UCSC)ZIC5  -     chr13:99962964-99971909 -  13q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZIC5  -     13q32.3   [Description]    (hg19-Feb_2009)
EnsemblZIC5 - 13q32.3 [CytoView hg19]  ZIC5 - 13q32.3 [CytoView hg38]
Mapping of homologs : NCBIZIC5 [Mapview hg19]  ZIC5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF378304 AI699626 CB129979 CN304220
RefSeq transcript (Entrez)NM_033132
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZIC5
Cluster EST : UnigeneHs.508570 [ NCBI ]
CGAP (NCI)Hs.508570
Alternative Splicing GalleryENSG00000139800
Gene ExpressionZIC5 [ NCBI-GEO ]   ZIC5 [ EBI - ARRAY_EXPRESS ]   ZIC5 [ SEEK ]   ZIC5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZIC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85416
GTEX Portal (Tissue expression)ZIC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96T25   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96T25  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96T25
Splice isoforms : SwissVarQ96T25
PhosPhoSitePlusQ96T25
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam00096   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZIC5
DMDM Disease mutations85416
Blocks (Seattle)ZIC5
SuperfamilyQ96T25
Human Protein AtlasENSG00000139800
Peptide AtlasQ96T25
HPRD15737
IPIIPI00163395   IPI00873366   
Protein Interaction databases
DIP (DOE-UCLA)Q96T25
IntAct (EBI)Q96T25
FunCoupENSG00000139800
BioGRIDZIC5
STRING (EMBL)ZIC5
ZODIACZIC5
Ontologies - Pathways
QuickGOQ96T25
Ontology : AmiGODNA binding  nucleus  nervous system development  cell differentiation  metal ion binding  
Ontology : EGO-EBIDNA binding  nucleus  nervous system development  cell differentiation  metal ion binding  
NDEx NetworkZIC5
Atlas of Cancer Signalling NetworkZIC5
Wikipedia pathwaysZIC5
Orthology - Evolution
OrthoDB85416
GeneTree (enSembl)ENSG00000139800
Phylogenetic Trees/Animal Genes : TreeFamZIC5
HOVERGENQ96T25
HOGENOMQ96T25
Homologs : HomoloGeneZIC5
Homology/Alignments : Family Browser (UCSC)ZIC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZIC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZIC5
dbVarZIC5
ClinVarZIC5
1000_GenomesZIC5 
Exome Variant ServerZIC5
ExAC (Exome Aggregation Consortium)ZIC5 (select the gene name)
Genetic variants : HAPMAP85416
Genomic Variants (DGV)ZIC5 [DGVbeta]
DECIPHERZIC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZIC5 
Mutations
ICGC Data PortalZIC5 
TCGA Data PortalZIC5 
Broad Tumor PortalZIC5
OASIS PortalZIC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZIC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZIC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZIC5
DgiDB (Drug Gene Interaction Database)ZIC5
DoCM (Curated mutations)ZIC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZIC5 (select a term)
intoGenZIC5
Cancer3DZIC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZIC5
Genetic Testing Registry ZIC5
NextProtQ96T25 [Medical]
TSGene85416
GENETestsZIC5
Target ValidationZIC5
Huge Navigator ZIC5 [HugePedia]
snp3D : Map Gene to Disease85416
BioCentury BCIQZIC5
ClinGenZIC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85416
Chemical/Pharm GKB GenePA134941698
Clinical trialZIC5
Miscellaneous
canSAR (ICR)ZIC5 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZIC5
EVEXZIC5
GoPubMedZIC5
iHOPZIC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:44:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.