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ZIM2 (zinc finger imprinted 2)

Identity

Alias_symbol (synonym)ZNF656
Other alias
HGNC (Hugo) ZIM2
LocusID (NCBI) 23619
Atlas_Id 75962
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 56774556 and ends at 56840729 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATF7IP (12p13.1) / ZIM2 (19q13.43)DAB2 (5p13.1) / ZIM2 (19q13.43)ZIM2 (19q13.43) / PRR14 (16p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZIM2   12875
Cards
Entrez_Gene (NCBI)ZIM2  23619  zinc finger imprinted 2
AliasesZNF656
GeneCards (Weizmann)ZIM2
Ensembl hg19 (Hinxton)ENSG00000269699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269699 [Gene_View]  chr19:56774556-56840729 [Contig_View]  ZIM2 [Vega]
ICGC DataPortalENSG00000269699
TCGA cBioPortalZIM2
AceView (NCBI)ZIM2
Genatlas (Paris)ZIM2
WikiGenes23619
SOURCE (Princeton)ZIM2
Genetics Home Reference (NIH)ZIM2
Genomic and cartography
GoldenPath hg38 (UCSC)ZIM2  -     chr19:56774556-56840729 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZIM2  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZIM2 - 19q13.43 [CytoView hg19]  ZIM2 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZIM2 [Mapview hg19]  ZIM2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF166122 AI418432 BC104876 BC104878 BC143663
RefSeq transcript (Entrez)NM_001146326 NM_001146327 NM_015363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZIM2
Cluster EST : UnigeneHs.731875 [ NCBI ]
CGAP (NCI)Hs.731875
Alternative Splicing GalleryENSG00000269699
Gene ExpressionZIM2 [ NCBI-GEO ]   ZIM2 [ EBI - ARRAY_EXPRESS ]   ZIM2 [ SEEK ]   ZIM2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZIM2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23619
GTEX Portal (Tissue expression)ZIM2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZV7
Splice isoforms : SwissVarQ9NZV7
PhosPhoSitePlusQ9NZV7
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)   
Domain families : Pfam (NCBI)pfam01352   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZIM2
DMDM Disease mutations23619
Blocks (Seattle)ZIM2
SuperfamilyQ9NZV7
Human Protein AtlasENSG00000269699
Peptide AtlasQ9NZV7
HPRD10321
IPIIPI00183110   IPI00872298   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZV7
IntAct (EBI)Q9NZV7
FunCoupENSG00000269699
BioGRIDZIM2
STRING (EMBL)ZIM2
ZODIACZIM2
Ontologies - Pathways
QuickGOQ9NZV7
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZIM2
Atlas of Cancer Signalling NetworkZIM2
Wikipedia pathwaysZIM2
Orthology - Evolution
OrthoDB23619
GeneTree (enSembl)ENSG00000269699
Phylogenetic Trees/Animal Genes : TreeFamZIM2
HOVERGENQ9NZV7
HOGENOMQ9NZV7
Homologs : HomoloGeneZIM2
Homology/Alignments : Family Browser (UCSC)ZIM2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZIM2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZIM2
dbVarZIM2
ClinVarZIM2
1000_GenomesZIM2 
Exome Variant ServerZIM2
ExAC (Exome Aggregation Consortium)ZIM2 (select the gene name)
Genetic variants : HAPMAP23619
Genomic Variants (DGV)ZIM2 [DGVbeta]
DECIPHERZIM2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZIM2 
Mutations
ICGC Data PortalZIM2 
TCGA Data PortalZIM2 
Broad Tumor PortalZIM2
OASIS PortalZIM2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZIM2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZIM2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZIM2
DgiDB (Drug Gene Interaction Database)ZIM2
DoCM (Curated mutations)ZIM2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZIM2 (select a term)
intoGenZIM2
Cancer3DZIM2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZIM2
Genetic Testing Registry ZIM2
NextProtQ9NZV7 [Medical]
TSGene23619
GENETestsZIM2
Target ValidationZIM2
Huge Navigator ZIM2 [HugePedia]
snp3D : Map Gene to Disease23619
BioCentury BCIQZIM2
ClinGenZIM2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23619
Chemical/Pharm GKB GenePA37464
Clinical trialZIM2
Miscellaneous
canSAR (ICR)ZIM2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZIM2
EVEXZIM2
GoPubMedZIM2
iHOPZIM2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:20 CEST 2017

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