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ZIM3 (zinc finger imprinted 3)

Identity

Alias_symbol (synonym)ZNF657
Other alias
HGNC (Hugo) ZIM3
LocusID (NCBI) 114026
Atlas_Id 75964
Location 19q13.43  [Link to chromosome band 19q13]
Location_base_pair Starts at 57134096 and ends at 57145202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZIM3   16366
Cards
Entrez_Gene (NCBI)ZIM3  114026  zinc finger imprinted 3
AliasesZNF657
GeneCards (Weizmann)ZIM3
Ensembl hg19 (Hinxton)ENSG00000141946 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141946 [Gene_View]  chr19:57134096-57145202 [Contig_View]  ZIM3 [Vega]
ICGC DataPortalENSG00000141946
TCGA cBioPortalZIM3
AceView (NCBI)ZIM3
Genatlas (Paris)ZIM3
WikiGenes114026
SOURCE (Princeton)ZIM3
Genetics Home Reference (NIH)ZIM3
Genomic and cartography
GoldenPath hg38 (UCSC)ZIM3  -     chr19:57134096-57145202 -  19q13.43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZIM3  -     19q13.43   [Description]    (hg19-Feb_2009)
EnsemblZIM3 - 19q13.43 [CytoView hg19]  ZIM3 - 19q13.43 [CytoView hg38]
Mapping of homologs : NCBIZIM3 [Mapview hg19]  ZIM3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF365931 BC069071 BC114446 BC114503
RefSeq transcript (Entrez)NM_052882
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZIM3
Cluster EST : UnigeneHs.348622 [ NCBI ]
CGAP (NCI)Hs.348622
Alternative Splicing GalleryENSG00000141946
Gene ExpressionZIM3 [ NCBI-GEO ]   ZIM3 [ EBI - ARRAY_EXPRESS ]   ZIM3 [ SEEK ]   ZIM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZIM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)114026
GTEX Portal (Tissue expression)ZIM3
Human Protein AtlasENSG00000141946-ZIM3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96PE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96PE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96PE6
Splice isoforms : SwissVarQ96PE6
PhosPhoSitePlusQ96PE6
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZIM3
DMDM Disease mutations114026
Blocks (Seattle)ZIM3
SuperfamilyQ96PE6
Human Protein Atlas [tissue]ENSG00000141946-ZIM3 [tissue]
Peptide AtlasQ96PE6
HPRD15738
IPIIPI00289709   
Protein Interaction databases
DIP (DOE-UCLA)Q96PE6
IntAct (EBI)Q96PE6
FunCoupENSG00000141946
BioGRIDZIM3
STRING (EMBL)ZIM3
ZODIACZIM3
Ontologies - Pathways
QuickGOQ96PE6
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZIM3
Atlas of Cancer Signalling NetworkZIM3
Wikipedia pathwaysZIM3
Orthology - Evolution
OrthoDB114026
GeneTree (enSembl)ENSG00000141946
Phylogenetic Trees/Animal Genes : TreeFamZIM3
HOVERGENQ96PE6
HOGENOMQ96PE6
Homologs : HomoloGeneZIM3
Homology/Alignments : Family Browser (UCSC)ZIM3
Gene fusions - Rearrangements
Tumor Fusion PortalZIM3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZIM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZIM3
dbVarZIM3
ClinVarZIM3
1000_GenomesZIM3 
Exome Variant ServerZIM3
ExAC (Exome Aggregation Consortium)ENSG00000141946
GNOMAD BrowserENSG00000141946
Genetic variants : HAPMAP114026
Genomic Variants (DGV)ZIM3 [DGVbeta]
DECIPHERZIM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZIM3 
Mutations
ICGC Data PortalZIM3 
TCGA Data PortalZIM3 
Broad Tumor PortalZIM3
OASIS PortalZIM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZIM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZIM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZIM3
DgiDB (Drug Gene Interaction Database)ZIM3
DoCM (Curated mutations)ZIM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZIM3 (select a term)
intoGenZIM3
Cancer3DZIM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZIM3
MedgenZIM3
Genetic Testing Registry ZIM3
NextProtQ96PE6 [Medical]
TSGene114026
GENETestsZIM3
Target ValidationZIM3
Huge Navigator ZIM3 [HugePedia]
snp3D : Map Gene to Disease114026
BioCentury BCIQZIM3
ClinGenZIM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD114026
Chemical/Pharm GKB GenePA38127
Clinical trialZIM3
Miscellaneous
canSAR (ICR)ZIM3 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZIM3
EVEXZIM3
GoPubMedZIM3
iHOPZIM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:40:22 CET 2017

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