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ZKSCAN2 (zinc finger with KRAB and SCAN domains 2)

Identity

Alias_namesZNF694
zinc finger protein 694
Alias_symbol (synonym)FLJ23199
ZSCAN34
Other aliasZSCAN31
HGNC (Hugo) ZKSCAN2
LocusID (NCBI) 342357
Atlas_Id 75965
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 25236001 and ends at 25257534 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZKSCAN2   25677
Cards
Entrez_Gene (NCBI)ZKSCAN2  342357  zinc finger with KRAB and SCAN domains 2
AliasesZNF694; ZSCAN31; ZSCAN34
GeneCards (Weizmann)ZKSCAN2
Ensembl hg19 (Hinxton)ENSG00000155592 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000155592 [Gene_View]  chr16:25236001-25257534 [Contig_View]  ZKSCAN2 [Vega]
ICGC DataPortalENSG00000155592
TCGA cBioPortalZKSCAN2
AceView (NCBI)ZKSCAN2
Genatlas (Paris)ZKSCAN2
WikiGenes342357
SOURCE (Princeton)ZKSCAN2
Genetics Home Reference (NIH)ZKSCAN2
Genomic and cartography
GoldenPath hg38 (UCSC)ZKSCAN2  -     chr16:25236001-25257534 -  16p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZKSCAN2  -     16p12.1   [Description]    (hg19-Feb_2009)
EnsemblZKSCAN2 - 16p12.1 [CytoView hg19]  ZKSCAN2 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIZKSCAN2 [Mapview hg19]  ZKSCAN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026852 AK131342 AK302399 AK303472 BC130007
RefSeq transcript (Entrez)NM_001012981
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZKSCAN2
Cluster EST : UnigeneHs.513451 [ NCBI ]
CGAP (NCI)Hs.513451
Alternative Splicing GalleryENSG00000155592
Gene ExpressionZKSCAN2 [ NCBI-GEO ]   ZKSCAN2 [ EBI - ARRAY_EXPRESS ]   ZKSCAN2 [ SEEK ]   ZKSCAN2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZKSCAN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342357
GTEX Portal (Tissue expression)ZKSCAN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ63HK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ63HK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ63HK3
Splice isoforms : SwissVarQ63HK3
PhosPhoSitePlusQ63HK3
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)C2H2_Znf_fam    KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZKSCAN2
DMDM Disease mutations342357
Blocks (Seattle)ZKSCAN2
SuperfamilyQ63HK3
Human Protein AtlasENSG00000155592
Peptide AtlasQ63HK3
HPRD11268
IPIIPI00470464   IPI00334638   
Protein Interaction databases
DIP (DOE-UCLA)Q63HK3
IntAct (EBI)Q63HK3
FunCoupENSG00000155592
BioGRIDZKSCAN2
STRING (EMBL)ZKSCAN2
ZODIACZKSCAN2
Ontologies - Pathways
QuickGOQ63HK3
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  molecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  biological_process  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  molecular_function  DNA binding  cellular_component  nucleus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  biological_process  metal ion binding  
NDEx NetworkZKSCAN2
Atlas of Cancer Signalling NetworkZKSCAN2
Wikipedia pathwaysZKSCAN2
Orthology - Evolution
OrthoDB342357
GeneTree (enSembl)ENSG00000155592
Phylogenetic Trees/Animal Genes : TreeFamZKSCAN2
HOVERGENQ63HK3
HOGENOMQ63HK3
Homologs : HomoloGeneZKSCAN2
Homology/Alignments : Family Browser (UCSC)ZKSCAN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZKSCAN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZKSCAN2
dbVarZKSCAN2
ClinVarZKSCAN2
1000_GenomesZKSCAN2 
Exome Variant ServerZKSCAN2
ExAC (Exome Aggregation Consortium)ZKSCAN2 (select the gene name)
Genetic variants : HAPMAP342357
Genomic Variants (DGV)ZKSCAN2 [DGVbeta]
DECIPHERZKSCAN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZKSCAN2 
Mutations
ICGC Data PortalZKSCAN2 
TCGA Data PortalZKSCAN2 
Broad Tumor PortalZKSCAN2
OASIS PortalZKSCAN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZKSCAN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZKSCAN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZKSCAN2
DgiDB (Drug Gene Interaction Database)ZKSCAN2
DoCM (Curated mutations)ZKSCAN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZKSCAN2 (select a term)
intoGenZKSCAN2
Cancer3DZKSCAN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZKSCAN2
Genetic Testing Registry ZKSCAN2
NextProtQ63HK3 [Medical]
TSGene342357
GENETestsZKSCAN2
Huge Navigator ZKSCAN2 [HugePedia]
snp3D : Map Gene to Disease342357
BioCentury BCIQZKSCAN2
ClinGenZKSCAN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342357
Chemical/Pharm GKB GenePA162409748
Clinical trialZKSCAN2
Miscellaneous
canSAR (ICR)ZKSCAN2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZKSCAN2
EVEXZKSCAN2
GoPubMedZKSCAN2
iHOPZKSCAN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:02:22 CEST 2017

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