Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZKSCAN3 (zinc finger with KRAB and SCAN domains 3)

Identity

Other namesZF47
ZFP306
ZNF306
ZNF309
ZSCAN13
ZSCAN35
Zfp47
dJ874C20.1
dJ874C20.1.
zfp-47
HGNC (Hugo) ZKSCAN3
LocusID (NCBI) 80317
Location 6p22.1
Location_base_pair Starts at 28317691 and ends at 28336954 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ZKSCAN3   13853
Cards
Entrez_Gene (NCBI)ZKSCAN3  80317  zinc finger with KRAB and SCAN domains 3
GeneCards (Weizmann)ZKSCAN3
Ensembl (Hinxton)ENSG00000189298 [Gene_View]  chr6:28317691-28336954 [Contig_View]  ZKSCAN3 [Vega]
ICGC DataPortalENSG00000189298
cBioPortalZKSCAN3
AceView (NCBI)ZKSCAN3
Genatlas (Paris)ZKSCAN3
WikiGenes80317
SOURCE (Princeton)NM_001242894 NM_001242895 NM_024493
Genomic and cartography
GoldenPath (UCSC)ZKSCAN3  -  6p22.1   chr6:28317691-28336954 +  6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZKSCAN3 - 6p22.1 [CytoView]
Mapping of homologs : NCBIZKSCAN3 [Mapview]
OMIM612791   
Gene and transcription
Genbank (Entrez)AK091225 AK122790 AK313532 BC006118 BM762243
RefSeq transcript (Entrez)NM_001242894 NM_001242895 NM_024493
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NT_007592 NW_001838980 NW_004929326
Consensus coding sequences : CCDS (NCBI)ZKSCAN3
Cluster EST : UnigeneHs.485004 [ NCBI ]
CGAP (NCI)Hs.485004
Alternative Splicing : Fast-db (Paris)GSHG0025548
Alternative Splicing GalleryENSG00000189298
Gene ExpressionZKSCAN3 [ NCBI-GEO ]     ZKSCAN3 [ SEEK ]   ZKSCAN3 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRR0 (Uniprot)
NextProtQ9BRR0  [Medical]
With graphics : InterProQ9BRR0
Splice isoforms : SwissVarQ9BRR0 (Swissvar)
Domaine pattern : Prosite (Expaxy)SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box [organisation]   Retrov_capsid_C [organisation]   Tscrpt_reg_SCAN [organisation]   Znf_C2H2 [organisation]   Znf_C2H2-like [organisation]   Znf_C2H2/integrase_DNA-bd [organisation]  
Related proteins : CluSTrQ9BRR0
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam01352    pfam02023   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
DMDM Disease mutations80317
Blocks (Seattle)Q9BRR0
Human Protein AtlasENSG00000189298 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9BRR0
HPRD11705
IPIIPI00010069   IPI00903149   IPI00479796   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRR0
IntAct (EBI)Q9BRR0
FunCoupENSG00000189298
BioGRIDZKSCAN3
InParanoidQ9BRR0
Interologous Interaction database Q9BRR0
IntegromeDBZKSCAN3
STRING (EMBL)ZKSCAN3
Ontologies - Pathways
Ontology : AmiGODNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  cytoplasm  transcription, DNA-templated  autophagy  lysosome organization  negative regulation of autophagy  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  negative regulation of cellular senescence  
Ontology : EGO-EBIDNA binding  chromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  cytoplasm  transcription, DNA-templated  autophagy  lysosome organization  negative regulation of autophagy  sequence-specific DNA binding  negative regulation of transcription, DNA-templated  positive regulation of transcription, DNA-templated  metal ion binding  negative regulation of cellular senescence  
Protein Interaction DatabaseZKSCAN3
Wikipedia pathwaysZKSCAN3
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ZKSCAN3
snp3D : Map Gene to Disease80317
SNP (GeneSNP Utah)ZKSCAN3
SNP : HGBaseZKSCAN3
Genetic variants : HAPMAPZKSCAN3
Exome VariantZKSCAN3
1000_GenomesZKSCAN3 
ICGC programENSG00000189298 
Somatic Mutations in Cancer : COSMICZKSCAN3 
CONAN: Copy Number AnalysisZKSCAN3 
Mutations and Diseases : HGMDZKSCAN3
Genomic VariantsZKSCAN3  ZKSCAN3 [DGVbeta]
dbVarZKSCAN3
ClinVarZKSCAN3
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM612791   
MedgenZKSCAN3
GENETestsZKSCAN3
Disease Genetic AssociationZKSCAN3
Huge Navigator ZKSCAN3 [HugePedia]  ZKSCAN3 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneZKSCAN3
Homology/Alignments : Family Browser (UCSC)ZKSCAN3
Phylogenetic Trees/Animal Genes : TreeFamZKSCAN3
Chemical/Protein Interactions : CTD80317
Chemical/Pharm GKB GenePA37821
Clinical trialZKSCAN3
Cancer Resource (Charite)ENSG00000189298
Other databases
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
CoreMineZKSCAN3
iHOPZKSCAN3
OncoSearchZKSCAN3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 14:21:56 CEST 2014

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