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ZKSCAN4 (zinc finger with KRAB and SCAN domains 4)

Identity

Other aliasP1P373C6
ZNF307
ZNF427
ZSCAN36
HGNC (Hugo) ZKSCAN4
LocusID (NCBI) 387032
Atlas_Id 57470
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28241705 and ends at 28252296 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZKSCAN4   13854
Cards
Entrez_Gene (NCBI)ZKSCAN4  387032  zinc finger with KRAB and SCAN domains 4
AliasesP1P373C6; ZNF307; ZNF427; ZSCAN36
GeneCards (Weizmann)ZKSCAN4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:28241705-28252296 [Contig_View]  ZKSCAN4 [Vega]
TCGA cBioPortalZKSCAN4
AceView (NCBI)ZKSCAN4
Genatlas (Paris)ZKSCAN4
WikiGenes387032
SOURCE (Princeton)ZKSCAN4
Genetics Home Reference (NIH)ZKSCAN4
Genomic and cartography
GoldenPath hg38 (UCSC)ZKSCAN4  -     chr6:28241705-28252296 -  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZKSCAN4  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZKSCAN4 - 6p22.1 [CytoView hg19]  ZKSCAN4 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZKSCAN4 [Mapview hg19]  ZKSCAN4 [Mapview hg38]
OMIM611643   
Gene and transcription
Genbank (Entrez)AK056698 AK302017 AK315783 AY781778 BC014031
RefSeq transcript (Entrez)NM_001304506 NM_019110
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZKSCAN4
Cluster EST : UnigeneHs.739171 [ NCBI ]
CGAP (NCI)Hs.739171
Gene ExpressionZKSCAN4 [ NCBI-GEO ]   ZKSCAN4 [ EBI - ARRAY_EXPRESS ]   ZKSCAN4 [ SEEK ]   ZKSCAN4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZKSCAN4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387032
GTEX Portal (Tissue expression)ZKSCAN4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969J2
Splice isoforms : SwissVarQ969J2
PhosPhoSitePlusQ969J2
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    KRAB_dom_sf    SCAN_dom    SCAN_sf    Znf_C2H2_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam01352    pfam02023   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZKSCAN4
DMDM Disease mutations387032
Blocks (Seattle)ZKSCAN4
SuperfamilyQ969J2
Peptide AtlasQ969J2
IPIIPI00005191   IPI01010115   IPI00387178   IPI00477801   IPI00939684   
Protein Interaction databases
DIP (DOE-UCLA)Q969J2
IntAct (EBI)Q969J2
BioGRIDZKSCAN4
STRING (EMBL)ZKSCAN4
ZODIACZKSCAN4
Ontologies - Pathways
QuickGOQ969J2
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription by RNA polymerase II  lysosome organization  negative regulation of autophagy  identical protein binding  metal ion binding  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytosol  transcription, DNA-templated  regulation of transcription by RNA polymerase II  lysosome organization  negative regulation of autophagy  identical protein binding  metal ion binding  
NDEx NetworkZKSCAN4
Atlas of Cancer Signalling NetworkZKSCAN4
Wikipedia pathwaysZKSCAN4
Orthology - Evolution
OrthoDB387032
Phylogenetic Trees/Animal Genes : TreeFamZKSCAN4
HOVERGENQ969J2
HOGENOMQ969J2
Homologs : HomoloGeneZKSCAN4
Homology/Alignments : Family Browser (UCSC)ZKSCAN4
Gene fusions - Rearrangements
Fusion : QuiverZKSCAN4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZKSCAN4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZKSCAN4
dbVarZKSCAN4
ClinVarZKSCAN4
1000_GenomesZKSCAN4 
Exome Variant ServerZKSCAN4
Varsome BrowserZKSCAN4
Genetic variants : HAPMAP387032
Genomic Variants (DGV)ZKSCAN4 [DGVbeta]
DECIPHERZKSCAN4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZKSCAN4 
Mutations
ICGC Data PortalZKSCAN4 
TCGA Data PortalZKSCAN4 
Broad Tumor PortalZKSCAN4
OASIS PortalZKSCAN4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZKSCAN4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZKSCAN4
BioMutasearch ZKSCAN4
DgiDB (Drug Gene Interaction Database)ZKSCAN4
DoCM (Curated mutations)ZKSCAN4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZKSCAN4 (select a term)
intoGenZKSCAN4
Cancer3DZKSCAN4(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611643   
Orphanet
DisGeNETZKSCAN4
MedgenZKSCAN4
Genetic Testing Registry ZKSCAN4
NextProtQ969J2 [Medical]
TSGene387032
GENETestsZKSCAN4
Target ValidationZKSCAN4
Huge Navigator ZKSCAN4 [HugePedia]
snp3D : Map Gene to Disease387032
BioCentury BCIQZKSCAN4
ClinGenZKSCAN4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387032
Chemical/Pharm GKB GenePA162409784
Clinical trialZKSCAN4
Miscellaneous
canSAR (ICR)ZKSCAN4 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZKSCAN4
EVEXZKSCAN4
GoPubMedZKSCAN4
iHOPZKSCAN4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 12:02:47 CEST 2018

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