Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZKSCAN5 (zinc finger with KRAB and SCAN domains 5)

Identity

Alias_namesZFP95
zinc finger protein homologous to Zfp95 in mouse
zinc finger protein 95 homolog (mouse)
Alias_symbol (synonym)ZNF914
ZSCAN37
Other alias
HGNC (Hugo) ZKSCAN5
LocusID (NCBI) 23660
Atlas_Id 75967
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 99102573 and ends at 99131445 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZKSCAN5 (7q22.1) / HELLS (10q23.33)ZKSCAN5 (7q22.1) / PTMA (2q37.1)ZKSCAN5 (7q22.1) / SMO (7q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZKSCAN5   12867
Cards
Entrez_Gene (NCBI)ZKSCAN5  23660  zinc finger with KRAB and SCAN domains 5
AliasesZFP95; ZNF914; ZSCAN37
GeneCards (Weizmann)ZKSCAN5
Ensembl hg19 (Hinxton)ENSG00000196652 [Gene_View]  chr7:99102573-99131445 [Contig_View]  ZKSCAN5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196652 [Gene_View]  chr7:99102573-99131445 [Contig_View]  ZKSCAN5 [Vega]
ICGC DataPortalENSG00000196652
TCGA cBioPortalZKSCAN5
AceView (NCBI)ZKSCAN5
Genatlas (Paris)ZKSCAN5
WikiGenes23660
SOURCE (Princeton)ZKSCAN5
Genetics Home Reference (NIH)ZKSCAN5
Genomic and cartography
GoldenPath hg19 (UCSC)ZKSCAN5  -     chr7:99102573-99131445 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZKSCAN5  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblZKSCAN5 - 7q22.1 [CytoView hg19]  ZKSCAN5 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIZKSCAN5 [Mapview hg19]  ZKSCAN5 [Mapview hg38]
OMIM611272   
Gene and transcription
Genbank (Entrez)AB023232 AB742315 AB742316 AB742317 AB742318
RefSeq transcript (Entrez)NM_014569 NM_145102
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929332
Consensus coding sequences : CCDS (NCBI)ZKSCAN5
Cluster EST : UnigeneHs.110839 [ NCBI ]
CGAP (NCI)Hs.110839
Alternative Splicing GalleryENSG00000196652
Gene ExpressionZKSCAN5 [ NCBI-GEO ]   ZKSCAN5 [ EBI - ARRAY_EXPRESS ]   ZKSCAN5 [ SEEK ]   ZKSCAN5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZKSCAN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23660
GTEX Portal (Tissue expression)ZKSCAN5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2L8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2L8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2L8
Splice isoforms : SwissVarQ9Y2L8
PhosPhoSitePlusQ9Y2L8
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZKSCAN5
DMDM Disease mutations23660
Blocks (Seattle)ZKSCAN5
PDB (SRS)2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
PDB (PDBSum)2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
PDB (IMB)2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
PDB (RSDB)2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
Structural Biology KnowledgeBase2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
SCOP (Structural Classification of Proteins)2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
CATH (Classification of proteins structures)2EM5    2EMM    2EMZ    2EN3    2EOM    2EON    2EOO    2YSO    2YTG   
SuperfamilyQ9Y2L8
Human Protein AtlasENSG00000196652
Peptide AtlasQ9Y2L8
HPRD10318
IPIIPI00032316   IPI00927010   IPI00940309   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2L8
IntAct (EBI)Q9Y2L8
FunCoupENSG00000196652
BioGRIDZKSCAN5
STRING (EMBL)ZKSCAN5
ZODIACZKSCAN5
Ontologies - Pathways
QuickGOQ9Y2L8
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  regulation of transcription, DNA-templated  zinc ion binding  
NDEx NetworkZKSCAN5
Atlas of Cancer Signalling NetworkZKSCAN5
Wikipedia pathwaysZKSCAN5
Orthology - Evolution
OrthoDB23660
GeneTree (enSembl)ENSG00000196652
Phylogenetic Trees/Animal Genes : TreeFamZKSCAN5
HOVERGENQ9Y2L8
HOGENOMQ9Y2L8
Homologs : HomoloGeneZKSCAN5
Homology/Alignments : Family Browser (UCSC)ZKSCAN5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZKSCAN5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZKSCAN5
dbVarZKSCAN5
ClinVarZKSCAN5
1000_GenomesZKSCAN5 
Exome Variant ServerZKSCAN5
ExAC (Exome Aggregation Consortium)ZKSCAN5 (select the gene name)
Genetic variants : HAPMAP23660
Genomic Variants (DGV)ZKSCAN5 [DGVbeta]
DECIPHER (Syndromes)7:99102573-99131445  ENSG00000196652
CONAN: Copy Number AnalysisZKSCAN5 
Mutations
ICGC Data PortalZKSCAN5 
TCGA Data PortalZKSCAN5 
Broad Tumor PortalZKSCAN5
OASIS PortalZKSCAN5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZKSCAN5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZKSCAN5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZKSCAN5
DgiDB (Drug Gene Interaction Database)ZKSCAN5
DoCM (Curated mutations)ZKSCAN5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZKSCAN5 (select a term)
intoGenZKSCAN5
Cancer3DZKSCAN5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611272   
Orphanet
MedgenZKSCAN5
Genetic Testing Registry ZKSCAN5
NextProtQ9Y2L8 [Medical]
TSGene23660
GENETestsZKSCAN5
Huge Navigator ZKSCAN5 [HugePedia]
snp3D : Map Gene to Disease23660
BioCentury BCIQZKSCAN5
ClinGenZKSCAN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23660
Chemical/Pharm GKB GenePA162409785
Clinical trialZKSCAN5
Miscellaneous
canSAR (ICR)ZKSCAN5 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZKSCAN5
EVEXZKSCAN5
GoPubMedZKSCAN5
iHOPZKSCAN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:25 CET 2017

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