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ZKSCAN7 (zinc finger with KRAB and SCAN domains 7)

Identity

Alias_namesZNF64
ZNF448
ZNF167
zinc finger protein 64
zinc finger protein 448
zinc finger protein 167
Alias_symbol (synonym)FLJ12738
ZSCAN39
Other aliasZFP
HGNC (Hugo) ZKSCAN7
LocusID (NCBI) 55888
Atlas_Id 75968
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 44596667 and ends at 44613650 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
KIF15 (3p21.31) / ZKSCAN7 (3p21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZKSCAN7   12955
Cards
Entrez_Gene (NCBI)ZKSCAN7  55888  zinc finger with KRAB and SCAN domains 7
AliasesZFP; ZNF167; ZNF448; ZNF64; 
ZSCAN39
GeneCards (Weizmann)ZKSCAN7
Ensembl hg19 (Hinxton)ENSG00000196345 [Gene_View]  chr3:44596667-44613650 [Contig_View]  ZKSCAN7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196345 [Gene_View]  chr3:44596667-44613650 [Contig_View]  ZKSCAN7 [Vega]
ICGC DataPortalENSG00000196345
TCGA cBioPortalZKSCAN7
AceView (NCBI)ZKSCAN7
Genatlas (Paris)ZKSCAN7
WikiGenes55888
SOURCE (Princeton)ZKSCAN7
Genetics Home Reference (NIH)ZKSCAN7
Genomic and cartography
GoldenPath hg19 (UCSC)ZKSCAN7  -     chr3:44596667-44613650 +  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZKSCAN7  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblZKSCAN7 - 3p21.31 [CytoView hg19]  ZKSCAN7 - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIZKSCAN7 [Mapview hg19]  ZKSCAN7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF075093 AF154846 AK022800 AK291285 AY280798
RefSeq transcript (Entrez)NM_001288590 NM_001288591 NM_001288592 NM_018651 NM_025169
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309 NW_009646197
Consensus coding sequences : CCDS (NCBI)ZKSCAN7
Cluster EST : UnigeneHs.696570 [ NCBI ]
CGAP (NCI)Hs.696570
Alternative Splicing GalleryENSG00000196345
Gene ExpressionZKSCAN7 [ NCBI-GEO ]   ZKSCAN7 [ EBI - ARRAY_EXPRESS ]   ZKSCAN7 [ SEEK ]   ZKSCAN7 [ MEM ]
Gene Expression Viewer (FireBrowse)ZKSCAN7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55888
GTEX Portal (Tissue expression)ZKSCAN7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9P0L1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9P0L1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9P0L1
Splice isoforms : SwissVarQ9P0L1
PhosPhoSitePlusQ9P0L1
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Krueppel-associated_box    Retrov_capsid_C    Tscrpt_reg_SCAN    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)   
Domain families : Pfam (NCBI)pfam01352    pfam02023   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZKSCAN7
DMDM Disease mutations55888
Blocks (Seattle)ZKSCAN7
SuperfamilyQ9P0L1
Human Protein AtlasENSG00000196345
Peptide AtlasQ9P0L1
HPRD15744
IPIIPI00479927   IPI00396512   IPI00386232   IPI01011161   IPI00797926   IPI00926070   IPI00924437   
Protein Interaction databases
DIP (DOE-UCLA)Q9P0L1
IntAct (EBI)Q9P0L1
FunCoupENSG00000196345
BioGRIDZKSCAN7
STRING (EMBL)ZKSCAN7
ZODIACZKSCAN7
Ontologies - Pathways
QuickGOQ9P0L1
Ontology : AmiGODNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  sequence-specific DNA binding transcription factor activity  protein binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZKSCAN7
Atlas of Cancer Signalling NetworkZKSCAN7
Wikipedia pathwaysZKSCAN7
Orthology - Evolution
OrthoDB55888
GeneTree (enSembl)ENSG00000196345
Phylogenetic Trees/Animal Genes : TreeFamZKSCAN7
HOVERGENQ9P0L1
HOGENOMQ9P0L1
Homologs : HomoloGeneZKSCAN7
Homology/Alignments : Family Browser (UCSC)ZKSCAN7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZKSCAN7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZKSCAN7
dbVarZKSCAN7
ClinVarZKSCAN7
1000_GenomesZKSCAN7 
Exome Variant ServerZKSCAN7
ExAC (Exome Aggregation Consortium)ZKSCAN7 (select the gene name)
Genetic variants : HAPMAP55888
Genomic Variants (DGV)ZKSCAN7 [DGVbeta]
DECIPHER (Syndromes)3:44596667-44613650  ENSG00000196345
CONAN: Copy Number AnalysisZKSCAN7 
Mutations
ICGC Data PortalZKSCAN7 
TCGA Data PortalZKSCAN7 
Broad Tumor PortalZKSCAN7
OASIS PortalZKSCAN7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZKSCAN7
BioMutasearch ZKSCAN7
DgiDB (Drug Gene Interaction Database)ZKSCAN7
DoCM (Curated mutations)ZKSCAN7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZKSCAN7 (select a term)
intoGenZKSCAN7
Cancer3DZKSCAN7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZKSCAN7
Genetic Testing Registry ZKSCAN7
NextProtQ9P0L1 [Medical]
TSGene55888
GENETestsZKSCAN7
Huge Navigator ZKSCAN7 [HugePedia]
snp3D : Map Gene to Disease55888
BioCentury BCIQZKSCAN7
ClinGenZKSCAN7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55888
Chemical/Pharm GKB GenePA37537
Clinical trialZKSCAN7
Miscellaneous
canSAR (ICR)ZKSCAN7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZKSCAN7
EVEXZKSCAN7
GoPubMedZKSCAN7
iHOPZKSCAN7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:26 CET 2017

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