Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZKSCAN8 (zinc finger with KRAB and SCAN domains 8)

Identity

Alias_namesZNF192
zinc finger protein 192
Alias_symbol (synonym)LD5-1
ZSCAN40
Other alias
HGNC (Hugo) ZKSCAN8
LocusID (NCBI) 7745
Atlas_Id 75969
Location 6p22.1  [Link to chromosome band 6p22]
Location_base_pair Starts at 28141910 and ends at 28159472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZKSCAN8   12983
Cards
Entrez_Gene (NCBI)ZKSCAN8  7745  zinc finger with KRAB and SCAN domains 8
AliasesLD5-1; ZNF192; ZSCAN40
GeneCards (Weizmann)ZKSCAN8
Ensembl hg19 (Hinxton)ENSG00000198315 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198315 [Gene_View]  chr6:28141910-28159472 [Contig_View]  ZKSCAN8 [Vega]
ICGC DataPortalENSG00000198315
TCGA cBioPortalZKSCAN8
AceView (NCBI)ZKSCAN8
Genatlas (Paris)ZKSCAN8
WikiGenes7745
SOURCE (Princeton)ZKSCAN8
Genetics Home Reference (NIH)ZKSCAN8
Genomic and cartography
GoldenPath hg38 (UCSC)ZKSCAN8  -     chr6:28141910-28159472 +  6p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZKSCAN8  -     6p22.1   [Description]    (hg19-Feb_2009)
EnsemblZKSCAN8 - 6p22.1 [CytoView hg19]  ZKSCAN8 - 6p22.1 [CytoView hg38]
Mapping of homologs : NCBIZKSCAN8 [Mapview hg19]  ZKSCAN8 [Mapview hg38]
OMIM602240   
Gene and transcription
Genbank (Entrez)AA453245 AB208793 AK302402 BC040316 BC096282
RefSeq transcript (Entrez)NM_001278119 NM_001278121 NM_001278122 NM_006298
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZKSCAN8
Cluster EST : UnigeneHs.711890 [ NCBI ]
CGAP (NCI)Hs.711890
Alternative Splicing GalleryENSG00000198315
Gene ExpressionZKSCAN8 [ NCBI-GEO ]   ZKSCAN8 [ EBI - ARRAY_EXPRESS ]   ZKSCAN8 [ SEEK ]   ZKSCAN8 [ MEM ]
Gene Expression Viewer (FireBrowse)ZKSCAN8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)7745
GTEX Portal (Tissue expression)ZKSCAN8
Human Protein AtlasENSG00000198315-ZKSCAN8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15776   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15776  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15776
Splice isoforms : SwissVarQ15776
PhosPhoSitePlusQ15776
Domaine pattern : Prosite (Expaxy)KRAB (PS50805)    SCAN_BOX (PS50804)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)KRAB    Retrov_capsid_C    SCAN_dom    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)KRAB (PF01352)    SCAN (PF02023)    zf-C2H2 (PF00096)    zf-C2H2_6 (PF13912)   
Domain families : Pfam (NCBI)pfam01352    pfam02023    pfam00096    pfam13912   
Domain families : Smart (EMBL)KRAB (SM00349)  SCAN (SM00431)  ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)ZKSCAN8
DMDM Disease mutations7745
Blocks (Seattle)ZKSCAN8
SuperfamilyQ15776
Human Protein Atlas [tissue]ENSG00000198315-ZKSCAN8 [tissue]
Peptide AtlasQ15776
HPRD03760
IPIIPI00019520   IPI00909082   
Protein Interaction databases
DIP (DOE-UCLA)Q15776
IntAct (EBI)Q15776
FunCoupENSG00000198315
BioGRIDZKSCAN8
STRING (EMBL)ZKSCAN8
ZODIACZKSCAN8
Ontologies - Pathways
QuickGOQ15776
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZKSCAN8
Atlas of Cancer Signalling NetworkZKSCAN8
Wikipedia pathwaysZKSCAN8
Orthology - Evolution
OrthoDB7745
GeneTree (enSembl)ENSG00000198315
Phylogenetic Trees/Animal Genes : TreeFamZKSCAN8
HOVERGENQ15776
HOGENOMQ15776
Homologs : HomoloGeneZKSCAN8
Homology/Alignments : Family Browser (UCSC)ZKSCAN8
Gene fusions - Rearrangements
Fusion : QuiverZKSCAN8
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZKSCAN8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZKSCAN8
dbVarZKSCAN8
ClinVarZKSCAN8
1000_GenomesZKSCAN8 
Exome Variant ServerZKSCAN8
ExAC (Exome Aggregation Consortium)ENSG00000198315
GNOMAD BrowserENSG00000198315
Genetic variants : HAPMAP7745
Genomic Variants (DGV)ZKSCAN8 [DGVbeta]
DECIPHERZKSCAN8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZKSCAN8 
Mutations
ICGC Data PortalZKSCAN8 
TCGA Data PortalZKSCAN8 
Broad Tumor PortalZKSCAN8
OASIS PortalZKSCAN8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDZKSCAN8
BioMutasearch ZKSCAN8
DgiDB (Drug Gene Interaction Database)ZKSCAN8
DoCM (Curated mutations)ZKSCAN8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZKSCAN8 (select a term)
intoGenZKSCAN8
Cancer3DZKSCAN8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602240   
Orphanet
DisGeNETZKSCAN8
MedgenZKSCAN8
Genetic Testing Registry ZKSCAN8
NextProtQ15776 [Medical]
TSGene7745
GENETestsZKSCAN8
Target ValidationZKSCAN8
Huge Navigator ZKSCAN8 [HugePedia]
snp3D : Map Gene to Disease7745
BioCentury BCIQZKSCAN8
ClinGenZKSCAN8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD7745
Chemical/Pharm GKB GenePA37563
Clinical trialZKSCAN8
Miscellaneous
canSAR (ICR)ZKSCAN8 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZKSCAN8
EVEXZKSCAN8
GoPubMedZKSCAN8
iHOPZKSCAN8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Feb 23 18:58:53 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.