Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZMAT1 (zinc finger matrin-type 1)

Identity

Alias_symbol (synonym)KIAA1789
Other alias-
HGNC (Hugo) ZMAT1
LocusID (NCBI) 84460
Atlas_Id 55731
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101137260 and ends at 101187039 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ZMAT1 (Xq22.1) / ZMAT1 (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMAT1   29377
Cards
Entrez_Gene (NCBI)ZMAT1  84460  zinc finger matrin-type 1
Aliases
GeneCards (Weizmann)ZMAT1
Ensembl hg19 (Hinxton)ENSG00000166432 [Gene_View]  chrX:101137260-101187039 [Contig_View]  ZMAT1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000166432 [Gene_View]  chrX:101137260-101187039 [Contig_View]  ZMAT1 [Vega]
ICGC DataPortalENSG00000166432
TCGA cBioPortalZMAT1
AceView (NCBI)ZMAT1
Genatlas (Paris)ZMAT1
WikiGenes84460
SOURCE (Princeton)ZMAT1
Genetics Home Reference (NIH)ZMAT1
Genomic and cartography
GoldenPath hg19 (UCSC)ZMAT1  -     chrX:101137260-101187039 -  Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZMAT1  -     Xq22.1   [Description]    (hg38-Dec_2013)
EnsemblZMAT1 - Xq22.1 [CytoView hg19]  ZMAT1 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIZMAT1 [Mapview hg19]  ZMAT1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA101301 AA459272 AB058692 AK094141 AK296520
RefSeq transcript (Entrez)NM_001011657 NM_001282400 NM_001282401
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_016330 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)ZMAT1
Cluster EST : UnigeneHs.496512 [ NCBI ]
CGAP (NCI)Hs.496512
Alternative Splicing GalleryENSG00000166432
Gene ExpressionZMAT1 [ NCBI-GEO ]   ZMAT1 [ EBI - ARRAY_EXPRESS ]   ZMAT1 [ SEEK ]   ZMAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84460
GTEX Portal (Tissue expression)ZMAT1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9K5
Splice isoforms : SwissVarQ5H9K5
PhosPhoSitePlusQ5H9K5
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_U1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZMAT1
DMDM Disease mutations84460
Blocks (Seattle)ZMAT1
SuperfamilyQ5H9K5
Human Protein AtlasENSG00000166432
Peptide AtlasQ5H9K5
HPRD10029
IPIIPI00872406   IPI00478634   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9K5
IntAct (EBI)Q5H9K5
FunCoupENSG00000166432
BioGRIDZMAT1
STRING (EMBL)ZMAT1
ZODIACZMAT1
Ontologies - Pathways
QuickGOQ5H9K5
Ontology : AmiGOp53 binding  DNA binding  RNA binding  nucleus  zinc ion binding  intrinsic apoptotic signaling pathway by p53 class mediator  
Ontology : EGO-EBIp53 binding  DNA binding  RNA binding  nucleus  zinc ion binding  intrinsic apoptotic signaling pathway by p53 class mediator  
NDEx NetworkZMAT1
Atlas of Cancer Signalling NetworkZMAT1
Wikipedia pathwaysZMAT1
Orthology - Evolution
OrthoDB84460
GeneTree (enSembl)ENSG00000166432
Phylogenetic Trees/Animal Genes : TreeFamZMAT1
HOVERGENQ5H9K5
HOGENOMQ5H9K5
Homologs : HomoloGeneZMAT1
Homology/Alignments : Family Browser (UCSC)ZMAT1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMAT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMAT1
dbVarZMAT1
ClinVarZMAT1
1000_GenomesZMAT1 
Exome Variant ServerZMAT1
ExAC (Exome Aggregation Consortium)ZMAT1 (select the gene name)
Genetic variants : HAPMAP84460
Genomic Variants (DGV)ZMAT1 [DGVbeta]
DECIPHER (Syndromes)X:101137260-101187039  ENSG00000166432
CONAN: Copy Number AnalysisZMAT1 
Mutations
ICGC Data PortalZMAT1 
TCGA Data PortalZMAT1 
Broad Tumor PortalZMAT1
OASIS PortalZMAT1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMAT1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMAT1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZMAT1
DgiDB (Drug Gene Interaction Database)ZMAT1
DoCM (Curated mutations)ZMAT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMAT1 (select a term)
intoGenZMAT1
Cancer3DZMAT1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZMAT1
Genetic Testing Registry ZMAT1
NextProtQ5H9K5 [Medical]
TSGene84460
GENETestsZMAT1
Huge Navigator ZMAT1 [HugePedia]
snp3D : Map Gene to Disease84460
BioCentury BCIQZMAT1
ClinGenZMAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84460
Chemical/Pharm GKB GenePA134880461
Clinical trialZMAT1
Miscellaneous
canSAR (ICR)ZMAT1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMAT1
EVEXZMAT1
GoPubMedZMAT1
iHOPZMAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:34:54 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.