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ZMAT2 (zinc finger matrin-type 2)

Identity

Alias_symbol (synonym)FLJ31121
hSNU23
Snu23
Other aliasPtg-12
HGNC (Hugo) ZMAT2
LocusID (NCBI) 153527
Atlas_Id 54801
Location 5q31.3  [Link to chromosome band 5q31]
Location_base_pair Starts at 140079945 and ends at 140086266 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
HARS2 (5q31.3) / ZMAT2 (5q31.3)NECTIN2 (19q13.32) / ZMAT2 (5q31.3)ZMAT2 (5q31.3) / ACTG1 (17q25.3)
ZMAT2 (5q31.3) / PVALB (22q12.3)PVRL2 19q13.32 / ZMAT2 5q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMAT2   26433
Cards
Entrez_Gene (NCBI)ZMAT2  153527  zinc finger matrin-type 2
AliasesPtg-12; Snu23
GeneCards (Weizmann)ZMAT2
Ensembl hg19 (Hinxton)ENSG00000146007 [Gene_View]  chr5:140079945-140086266 [Contig_View]  ZMAT2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146007 [Gene_View]  chr5:140079945-140086266 [Contig_View]  ZMAT2 [Vega]
ICGC DataPortalENSG00000146007
TCGA cBioPortalZMAT2
AceView (NCBI)ZMAT2
Genatlas (Paris)ZMAT2
WikiGenes153527
SOURCE (Princeton)ZMAT2
Genetics Home Reference (NIH)ZMAT2
Genomic and cartography
GoldenPath hg19 (UCSC)ZMAT2  -     chr5:140079945-140086266 +  5q31.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZMAT2  -     5q31.3   [Description]    (hg38-Dec_2013)
EnsemblZMAT2 - 5q31.3 [CytoView hg19]  ZMAT2 - 5q31.3 [CytoView hg38]
Mapping of homologs : NCBIZMAT2 [Mapview hg19]  ZMAT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA071274 AK055683 BC056668 BP210985 BP370587
RefSeq transcript (Entrez)NM_144723
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_029289 NW_004929324
Consensus coding sequences : CCDS (NCBI)ZMAT2
Cluster EST : UnigeneHs.350194 [ NCBI ]
CGAP (NCI)Hs.350194
Alternative Splicing GalleryENSG00000146007
Gene ExpressionZMAT2 [ NCBI-GEO ]   ZMAT2 [ EBI - ARRAY_EXPRESS ]   ZMAT2 [ SEEK ]   ZMAT2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMAT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)153527
GTEX Portal (Tissue expression)ZMAT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NC0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NC0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NC0
Splice isoforms : SwissVarQ96NC0
PhosPhoSitePlusQ96NC0
Domains : Interpro (EBI)Znf_C2H2-like    Znf_C2H2_jaz    Znf_U1   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZMAT2
DMDM Disease mutations153527
Blocks (Seattle)ZMAT2
SuperfamilyQ96NC0
Human Protein AtlasENSG00000146007
Peptide AtlasQ96NC0
HPRD08094
IPIIPI00069734   
Protein Interaction databases
DIP (DOE-UCLA)Q96NC0
IntAct (EBI)Q96NC0
FunCoupENSG00000146007
BioGRIDZMAT2
STRING (EMBL)ZMAT2
ZODIACZMAT2
Ontologies - Pathways
QuickGOQ96NC0
Ontology : AmiGOmRNA splicing, via spliceosome  DNA binding  RNA binding  protein binding  zinc ion binding  U4/U6 x U5 tri-snRNP complex  
Ontology : EGO-EBImRNA splicing, via spliceosome  DNA binding  RNA binding  protein binding  zinc ion binding  U4/U6 x U5 tri-snRNP complex  
Pathways : KEGGSpliceosome   
NDEx NetworkZMAT2
Atlas of Cancer Signalling NetworkZMAT2
Wikipedia pathwaysZMAT2
Orthology - Evolution
OrthoDB153527
GeneTree (enSembl)ENSG00000146007
Phylogenetic Trees/Animal Genes : TreeFamZMAT2
HOVERGENQ96NC0
HOGENOMQ96NC0
Homologs : HomoloGeneZMAT2
Homology/Alignments : Family Browser (UCSC)ZMAT2
Gene fusions - Rearrangements
Fusion : MitelmanHARS2/ZMAT2 [5q31.3/5q31.3]  [t(5;5)(q31;q31)]  
Fusion : MitelmanPVRL2/ZMAT2 [19q13.32/5q31.3]  [t(5;19)(q31;q13)]  
Fusion: TCGAPVRL2 19q13.32 ZMAT2 5q31.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMAT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMAT2
dbVarZMAT2
ClinVarZMAT2
1000_GenomesZMAT2 
Exome Variant ServerZMAT2
ExAC (Exome Aggregation Consortium)ZMAT2 (select the gene name)
Genetic variants : HAPMAP153527
Genomic Variants (DGV)ZMAT2 [DGVbeta]
DECIPHER (Syndromes)5:140079945-140086266  ENSG00000146007
CONAN: Copy Number AnalysisZMAT2 
Mutations
ICGC Data PortalZMAT2 
TCGA Data PortalZMAT2 
Broad Tumor PortalZMAT2
OASIS PortalZMAT2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMAT2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMAT2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMAT2
DgiDB (Drug Gene Interaction Database)ZMAT2
DoCM (Curated mutations)ZMAT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMAT2 (select a term)
intoGenZMAT2
Cancer3DZMAT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZMAT2
Genetic Testing Registry ZMAT2
NextProtQ96NC0 [Medical]
TSGene153527
GENETestsZMAT2
Huge Navigator ZMAT2 [HugePedia]
snp3D : Map Gene to Disease153527
BioCentury BCIQZMAT2
ClinGenZMAT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD153527
Chemical/Pharm GKB GenePA134931664
Clinical trialZMAT2
Miscellaneous
canSAR (ICR)ZMAT2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMAT2
EVEXZMAT2
GoPubMedZMAT2
iHOPZMAT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:36 CEST 2017

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