Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZMAT3 (zinc finger matrin-type 3)

Identity

Alias_symbol (synonym)WIG1
MGC10613
FLJ12296
WIG-1
PAG608
Other alias
HGNC (Hugo) ZMAT3
LocusID (NCBI) 64393
Atlas_Id 42812
Location 3q26.32  [Link to chromosome band 3q26]
Location_base_pair Starts at 179017225 and ends at 179071868 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZMAT3 (3q26.32) / TP63 (3q28)ZMAT3 (3q26.32) / ZMAT3 (3q26.32)ZMAT3 3q26.32 / TP63 3q28

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMAT3   29983
Cards
Entrez_Gene (NCBI)ZMAT3  64393  zinc finger matrin-type 3
AliasesPAG608; WIG-1; WIG1
GeneCards (Weizmann)ZMAT3
Ensembl hg19 (Hinxton)ENSG00000172667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172667 [Gene_View]  chr3:179017225-179071868 [Contig_View]  ZMAT3 [Vega]
ICGC DataPortalENSG00000172667
TCGA cBioPortalZMAT3
AceView (NCBI)ZMAT3
Genatlas (Paris)ZMAT3
WikiGenes64393
SOURCE (Princeton)ZMAT3
Genetics Home Reference (NIH)ZMAT3
Genomic and cartography
GoldenPath hg38 (UCSC)ZMAT3  -     chr3:179017225-179071868 -  3q26.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMAT3  -     3q26.32   [Description]    (hg19-Feb_2009)
EnsemblZMAT3 - 3q26.32 [CytoView hg19]  ZMAT3 - 3q26.32 [CytoView hg38]
Mapping of homologs : NCBIZMAT3 [Mapview hg19]  ZMAT3 [Mapview hg38]
OMIM606452   
Gene and transcription
Genbank (Entrez)AF355465 AK022358 AK056245 AK122768 AY037945
RefSeq transcript (Entrez)NM_022470 NM_152240
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMAT3
Cluster EST : UnigeneHs.371609 [ NCBI ]
CGAP (NCI)Hs.371609
Alternative Splicing GalleryENSG00000172667
Gene ExpressionZMAT3 [ NCBI-GEO ]   ZMAT3 [ EBI - ARRAY_EXPRESS ]   ZMAT3 [ SEEK ]   ZMAT3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMAT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64393
GTEX Portal (Tissue expression)ZMAT3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HA38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HA38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HA38
Splice isoforms : SwissVarQ9HA38
PhosPhoSitePlusQ9HA38
Domains : Interpro (EBI)Znf_C2H2-like    Znf_C2H2_jaz    Znf_U1   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZMAT3
DMDM Disease mutations64393
Blocks (Seattle)ZMAT3
SuperfamilyQ9HA38
Human Protein AtlasENSG00000172667
Peptide AtlasQ9HA38
HPRD07343
IPIIPI00008281   IPI00171537   IPI00925784   
Protein Interaction databases
DIP (DOE-UCLA)Q9HA38
IntAct (EBI)Q9HA38
FunCoupENSG00000172667
BioGRIDZMAT3
STRING (EMBL)ZMAT3
ZODIACZMAT3
Ontologies - Pathways
QuickGOQ9HA38
Ontology : AmiGOp53 binding  RNA binding  RNA binding  protein binding  nucleoplasm  nucleolus  plasma membrane  cellular response to DNA damage stimulus  zinc ion binding  protein transport  regulation of growth  positive regulation of apoptotic process  intrinsic apoptotic signaling pathway by p53 class mediator  
Ontology : EGO-EBIp53 binding  RNA binding  RNA binding  protein binding  nucleoplasm  nucleolus  plasma membrane  cellular response to DNA damage stimulus  zinc ion binding  protein transport  regulation of growth  positive regulation of apoptotic process  intrinsic apoptotic signaling pathway by p53 class mediator  
Pathways : KEGGp53 signaling pathway   
NDEx NetworkZMAT3
Atlas of Cancer Signalling NetworkZMAT3
Wikipedia pathwaysZMAT3
Orthology - Evolution
OrthoDB64393
GeneTree (enSembl)ENSG00000172667
Phylogenetic Trees/Animal Genes : TreeFamZMAT3
HOVERGENQ9HA38
HOGENOMQ9HA38
Homologs : HomoloGeneZMAT3
Homology/Alignments : Family Browser (UCSC)ZMAT3
Gene fusions - Rearrangements
Fusion : MitelmanZMAT3/TP63 [3q26.32/3q28]  
Fusion: TCGAZMAT3 3q26.32 TP63 3q28 SKCM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMAT3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMAT3
dbVarZMAT3
ClinVarZMAT3
1000_GenomesZMAT3 
Exome Variant ServerZMAT3
ExAC (Exome Aggregation Consortium)ZMAT3 (select the gene name)
Genetic variants : HAPMAP64393
Genomic Variants (DGV)ZMAT3 [DGVbeta]
DECIPHERZMAT3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMAT3 
Mutations
ICGC Data PortalZMAT3 
TCGA Data PortalZMAT3 
Broad Tumor PortalZMAT3
OASIS PortalZMAT3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMAT3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMAT3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMAT3
DgiDB (Drug Gene Interaction Database)ZMAT3
DoCM (Curated mutations)ZMAT3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMAT3 (select a term)
intoGenZMAT3
Cancer3DZMAT3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606452   
Orphanet
MedgenZMAT3
Genetic Testing Registry ZMAT3
NextProtQ9HA38 [Medical]
TSGene64393
GENETestsZMAT3
Target ValidationZMAT3
Huge Navigator ZMAT3 [HugePedia]
snp3D : Map Gene to Disease64393
BioCentury BCIQZMAT3
ClinGenZMAT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64393
Chemical/Pharm GKB GenePA145147560
Clinical trialZMAT3
Miscellaneous
canSAR (ICR)ZMAT3 (select the gene name)
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMAT3
EVEXZMAT3
GoPubMedZMAT3
iHOPZMAT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 13:03:36 CEST 2017

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