Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZMAT4 (zinc finger matrin-type 4)

Identity

Alias_symbol (synonym)FLJ13842
Other alias-
HGNC (Hugo) ZMAT4
LocusID (NCBI) 79698
Atlas_Id 54802
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 40530591 and ends at 40897824 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANK1 (8p11.21) / ZMAT4 (8p11.21)BAG4 (8p11.23) / ZMAT4 (8p11.21)FNTA (8p11.21) / ZMAT4 (8p11.21)
GGNBP2 (17q12) / ZMAT4 (8p11.21)SLC20A2 (8p11.21) / ZMAT4 (8p11.21)UVRAG (11q13.5) / ZMAT4 (8p11.21)
WHSC1L1 (8p11.23) / ZMAT4 (8p11.21)ZMAT4 (8p11.21) / ZMAT4 (8p11.21)BAG4 8p11.23 / ZMAT4 8p11.21
FNTA 8p11.21 / ZMAT4 8p11.21GGNBP2 17q12 / ZMAT4 8p11.21SLC20A2 8p11.21 / ZMAT4 8p11.21
UVRAG 11q13.5 / ZMAT4 8p11.21WHSC1L1 8p11.23 / ZMAT4 8p11.21

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMAT4   25844
Cards
Entrez_Gene (NCBI)ZMAT4  79698  zinc finger matrin-type 4
Aliases
GeneCards (Weizmann)ZMAT4
Ensembl hg19 (Hinxton)ENSG00000165061 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165061 [Gene_View]  chr8:40530591-40897824 [Contig_View]  ZMAT4 [Vega]
ICGC DataPortalENSG00000165061
TCGA cBioPortalZMAT4
AceView (NCBI)ZMAT4
Genatlas (Paris)ZMAT4
WikiGenes79698
SOURCE (Princeton)ZMAT4
Genetics Home Reference (NIH)ZMAT4
Genomic and cartography
GoldenPath hg38 (UCSC)ZMAT4  -     chr8:40530591-40897824 -  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMAT4  -     8p11.21   [Description]    (hg19-Feb_2009)
EnsemblZMAT4 - 8p11.21 [CytoView hg19]  ZMAT4 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIZMAT4 [Mapview hg19]  ZMAT4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023904 BC019598
RefSeq transcript (Entrez)NM_001135731 NM_024645
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMAT4
Cluster EST : UnigeneHs.591850 [ NCBI ]
CGAP (NCI)Hs.591850
Alternative Splicing GalleryENSG00000165061
Gene ExpressionZMAT4 [ NCBI-GEO ]   ZMAT4 [ EBI - ARRAY_EXPRESS ]   ZMAT4 [ SEEK ]   ZMAT4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMAT4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79698
GTEX Portal (Tissue expression)ZMAT4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H898   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H898  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H898
Splice isoforms : SwissVarQ9H898
PhosPhoSitePlusQ9H898
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2_jaz    Znf_U1   
Domain families : Pfam (Sanger)zf-C2H2_jaz (PF12171)   
Domain families : Pfam (NCBI)pfam12171   
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  ZnF_U1 (SM00451)  
Conserved Domain (NCBI)ZMAT4
DMDM Disease mutations79698
Blocks (Seattle)ZMAT4
SuperfamilyQ9H898
Human Protein AtlasENSG00000165061
Peptide AtlasQ9H898
HPRD07837
IPIIPI00002880   IPI00177490   IPI00980666   IPI01013929   IPI00797411   
Protein Interaction databases
DIP (DOE-UCLA)Q9H898
IntAct (EBI)Q9H898
FunCoupENSG00000165061
BioGRIDZMAT4
STRING (EMBL)ZMAT4
ZODIACZMAT4
Ontologies - Pathways
QuickGOQ9H898
Ontology : AmiGOp53 binding  DNA binding  RNA binding  protein binding  nucleus  zinc ion binding  intrinsic apoptotic signaling pathway by p53 class mediator  
Ontology : EGO-EBIp53 binding  DNA binding  RNA binding  protein binding  nucleus  zinc ion binding  intrinsic apoptotic signaling pathway by p53 class mediator  
NDEx NetworkZMAT4
Atlas of Cancer Signalling NetworkZMAT4
Wikipedia pathwaysZMAT4
Orthology - Evolution
OrthoDB79698
GeneTree (enSembl)ENSG00000165061
Phylogenetic Trees/Animal Genes : TreeFamZMAT4
HOVERGENQ9H898
HOGENOMQ9H898
Homologs : HomoloGeneZMAT4
Homology/Alignments : Family Browser (UCSC)ZMAT4
Gene fusions - Rearrangements
Fusion : MitelmanANK1/ZMAT4 [8p11.21/8p11.21]  [t(8;8)(p11;p11)]  
Fusion : MitelmanBAG4/ZMAT4 [8p11.23/8p11.21]  [t(8;8)(p11;p11)]  
Fusion : MitelmanFNTA/ZMAT4 [8p11.21/8p11.21]  [t(8;8)(p11;p11)]  
Fusion : MitelmanGGNBP2/ZMAT4 [17q12/8p11.21]  [t(8;17)(p11;q12)]  
Fusion : MitelmanSLC20A2/ZMAT4 [8p11.21/8p11.21]  [t(8;8)(p11;p11)]  
Fusion : MitelmanUVRAG/ZMAT4 [11q13.5/8p11.21]  [t(8;11)(p11;q13)]  
Fusion : MitelmanWHSC1L1/ZMAT4 [8p11.23/8p11.21]  [t(8;8)(p11;p12)]  
Fusion: TCGABAG4 8p11.23 ZMAT4 8p11.21 BRCA
Fusion: TCGAFNTA 8p11.21 ZMAT4 8p11.21 BRCA
Fusion: TCGAGGNBP2 17q12 ZMAT4 8p11.21 BLCA
Fusion: TCGASLC20A2 8p11.21 ZMAT4 8p11.21 LUSC
Fusion: TCGAUVRAG 11q13.5 ZMAT4 8p11.21 BRCA
Fusion: TCGAWHSC1L1 8p11.23 ZMAT4 8p11.21 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMAT4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMAT4
dbVarZMAT4
ClinVarZMAT4
1000_GenomesZMAT4 
Exome Variant ServerZMAT4
ExAC (Exome Aggregation Consortium)ZMAT4 (select the gene name)
Genetic variants : HAPMAP79698
Genomic Variants (DGV)ZMAT4 [DGVbeta]
DECIPHERZMAT4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMAT4 
Mutations
ICGC Data PortalZMAT4 
TCGA Data PortalZMAT4 
Broad Tumor PortalZMAT4
OASIS PortalZMAT4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMAT4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMAT4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMAT4
DgiDB (Drug Gene Interaction Database)ZMAT4
DoCM (Curated mutations)ZMAT4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMAT4 (select a term)
intoGenZMAT4
Cancer3DZMAT4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZMAT4
Genetic Testing Registry ZMAT4
NextProtQ9H898 [Medical]
TSGene79698
GENETestsZMAT4
Target ValidationZMAT4
Huge Navigator ZMAT4 [HugePedia]
snp3D : Map Gene to Disease79698
BioCentury BCIQZMAT4
ClinGenZMAT4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79698
Chemical/Pharm GKB GenePA142670525
Clinical trialZMAT4
Miscellaneous
canSAR (ICR)ZMAT4 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMAT4
EVEXZMAT4
GoPubMedZMAT4
iHOPZMAT4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 17:19:22 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.