Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZMAT5 (zinc finger, matrin-type 5)

Identity

Alias_namesZC3H19
zinc finger CCCH-type containing 19
Alias_symbol (synonym)SNRNP20
Other alias
HGNC (Hugo) ZMAT5
LocusID (NCBI) 55954
Atlas_Id 75971
Location 22q12.2  [Link to chromosome band 22q12]
Location_base_pair Starts at 30126945 and ends at 30162969 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CABP7 (22q12.2) / ZMAT5 (22q12.2)MGST3 (1q24.1) / ZMAT5 (22q12.2)ZMAT5 (22q12.2) / ASCC2 (22q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMAT5   28046
Cards
Entrez_Gene (NCBI)ZMAT5  55954  zinc finger, matrin-type 5
AliasesSNRNP20
GeneCards (Weizmann)ZMAT5
Ensembl hg19 (Hinxton)ENSG00000100319 [Gene_View]  chr22:30126945-30162969 [Contig_View]  ZMAT5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000100319 [Gene_View]  chr22:30126945-30162969 [Contig_View]  ZMAT5 [Vega]
ICGC DataPortalENSG00000100319
TCGA cBioPortalZMAT5
AceView (NCBI)ZMAT5
Genatlas (Paris)ZMAT5
WikiGenes55954
SOURCE (Princeton)ZMAT5
Genetics Home Reference (NIH)ZMAT5
Genomic and cartography
GoldenPath hg19 (UCSC)ZMAT5  -     chr22:30126945-30162969 -  22q12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZMAT5  -     22q12.2   [Description]    (hg38-Dec_2013)
EnsemblZMAT5 - 22q12.2 [CytoView hg19]  ZMAT5 - 22q12.2 [CytoView hg38]
Mapping of homologs : NCBIZMAT5 [Mapview hg19]  ZMAT5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA312132 AK123261 AK292671 AL160311 BC009717
RefSeq transcript (Entrez)NM_001003692 NM_019103
RefSeq genomic (Entrez)NC_000022 NC_018933 NT_011520 NW_004929430
Consensus coding sequences : CCDS (NCBI)ZMAT5
Cluster EST : UnigeneHs.713647 [ NCBI ]
CGAP (NCI)Hs.713647
Alternative Splicing GalleryENSG00000100319
Gene ExpressionZMAT5 [ NCBI-GEO ]   ZMAT5 [ EBI - ARRAY_EXPRESS ]   ZMAT5 [ SEEK ]   ZMAT5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMAT5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55954
GTEX Portal (Tissue expression)ZMAT5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UDW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UDW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UDW3
Splice isoforms : SwissVarQ9UDW3
PhosPhoSitePlusQ9UDW3
Domaine pattern : Prosite (Expaxy)ZF_C3H1 (PS50103)   
Domains : Interpro (EBI)Znf_CCCH    Znf_U1-C   
Domain families : Pfam (Sanger)zf-CCCH (PF00642)    zf-U1 (PF06220)   
Domain families : Pfam (NCBI)pfam00642    pfam06220   
Domain families : Smart (EMBL)ZnF_C3H1 (SM00356)  
Conserved Domain (NCBI)ZMAT5
DMDM Disease mutations55954
Blocks (Seattle)ZMAT5
SuperfamilyQ9UDW3
Human Protein AtlasENSG00000100319
Peptide AtlasQ9UDW3
HPRD14247
IPIIPI00005177   
Protein Interaction databases
DIP (DOE-UCLA)Q9UDW3
IntAct (EBI)Q9UDW3
FunCoupENSG00000100319
BioGRIDZMAT5
STRING (EMBL)ZMAT5
ZODIACZMAT5
Ontologies - Pathways
QuickGOQ9UDW3
Ontology : AmiGOnucleoplasm  U12-type spliceosomal complex  mRNA processing  zinc ion binding  RNA splicing  
Ontology : EGO-EBInucleoplasm  U12-type spliceosomal complex  mRNA processing  zinc ion binding  RNA splicing  
NDEx NetworkZMAT5
Atlas of Cancer Signalling NetworkZMAT5
Wikipedia pathwaysZMAT5
Orthology - Evolution
OrthoDB55954
GeneTree (enSembl)ENSG00000100319
Phylogenetic Trees/Animal Genes : TreeFamZMAT5
HOVERGENQ9UDW3
HOGENOMQ9UDW3
Homologs : HomoloGeneZMAT5
Homology/Alignments : Family Browser (UCSC)ZMAT5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMAT5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMAT5
dbVarZMAT5
ClinVarZMAT5
1000_GenomesZMAT5 
Exome Variant ServerZMAT5
ExAC (Exome Aggregation Consortium)ZMAT5 (select the gene name)
Genetic variants : HAPMAP55954
Genomic Variants (DGV)ZMAT5 [DGVbeta]
DECIPHER (Syndromes)22:30126945-30162969  ENSG00000100319
CONAN: Copy Number AnalysisZMAT5 
Mutations
ICGC Data PortalZMAT5 
TCGA Data PortalZMAT5 
Broad Tumor PortalZMAT5
OASIS PortalZMAT5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMAT5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMAT5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMAT5
DgiDB (Drug Gene Interaction Database)ZMAT5
DoCM (Curated mutations)ZMAT5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMAT5 (select a term)
intoGenZMAT5
Cancer3DZMAT5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZMAT5
Genetic Testing Registry ZMAT5
NextProtQ9UDW3 [Medical]
TSGene55954
GENETestsZMAT5
Huge Navigator ZMAT5 [HugePedia]
snp3D : Map Gene to Disease55954
BioCentury BCIQZMAT5
ClinGenZMAT5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55954
Chemical/Pharm GKB GenePA142670524
Clinical trialZMAT5
Miscellaneous
canSAR (ICR)ZMAT5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMAT5
EVEXZMAT5
GoPubMedZMAT5
iHOPZMAT5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:52:26 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.