Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ZMIZ2 (zinc finger MIZ-type containing 2)

Identity

Alias_symbol (synonym)KIAA1886
hZIMP7
ZIMP7
DKFZp761I2123
NET27
Other aliasTRAFIP20
HGNC (Hugo) ZMIZ2
LocusID (NCBI) 83637
Atlas_Id 75973
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 44748566 and ends at 44769880 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HBB (11p15.4) / ZMIZ2 (7p13)HLA-C (6p21.33) / ZMIZ2 (7p13)ZMIZ2 (7p13) / C14orf166 (14q22.1)
ZMIZ2 (7p13) / FAM3C (7q31.31)ZMIZ2 (7p13) / THBS1 (15q14)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMIZ2   22229
Cards
Entrez_Gene (NCBI)ZMIZ2  83637  zinc finger MIZ-type containing 2
AliasesNET27; TRAFIP20; ZIMP7; hZIMP7
GeneCards (Weizmann)ZMIZ2
Ensembl hg19 (Hinxton)ENSG00000122515 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122515 [Gene_View]  chr7:44748566-44769880 [Contig_View]  ZMIZ2 [Vega]
ICGC DataPortalENSG00000122515
TCGA cBioPortalZMIZ2
AceView (NCBI)ZMIZ2
Genatlas (Paris)ZMIZ2
WikiGenes83637
SOURCE (Princeton)ZMIZ2
Genetics Home Reference (NIH)ZMIZ2
Genomic and cartography
GoldenPath hg38 (UCSC)ZMIZ2  -     chr7:44748566-44769880 +  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMIZ2  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblZMIZ2 - 7p13 [CytoView hg19]  ZMIZ2 - 7p13 [CytoView hg38]
Mapping of homologs : NCBIZMIZ2 [Mapview hg19]  ZMIZ2 [Mapview hg38]
OMIM611196   
Gene and transcription
Genbank (Entrez)AB015330 AB067473 AF357908 AI494261 AK057115
RefSeq transcript (Entrez)NM_001300959 NM_031449 NM_174929
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMIZ2
Cluster EST : UnigeneHs.600681 [ NCBI ]
CGAP (NCI)Hs.600681
Alternative Splicing GalleryENSG00000122515
Gene ExpressionZMIZ2 [ NCBI-GEO ]   ZMIZ2 [ EBI - ARRAY_EXPRESS ]   ZMIZ2 [ SEEK ]   ZMIZ2 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMIZ2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83637
GTEX Portal (Tissue expression)ZMIZ2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NF64   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NF64  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NF64
Splice isoforms : SwissVarQ8NF64
PhosPhoSitePlusQ8NF64
Domaine pattern : Prosite (Expaxy)ZF_SP_RING (PS51044)   
Domains : Interpro (EBI)Znf_MIZ    Znf_RING/FYVE/PHD   
Domain families : Pfam (Sanger)zf-MIZ (PF02891)   
Domain families : Pfam (NCBI)pfam02891   
Conserved Domain (NCBI)ZMIZ2
DMDM Disease mutations83637
Blocks (Seattle)ZMIZ2
SuperfamilyQ8NF64
Human Protein AtlasENSG00000122515
Peptide AtlasQ8NF64
HPRD13225
IPIIPI00302607   IPI00289799   IPI00845315   IPI00843751   IPI00910158   IPI00176844   IPI01012102   IPI00927660   IPI00927874   IPI00924564   
Protein Interaction databases
DIP (DOE-UCLA)Q8NF64
IntAct (EBI)Q8NF64
FunCoupENSG00000122515
BioGRIDZMIZ2
STRING (EMBL)ZMIZ2
ZODIACZMIZ2
Ontologies - Pathways
QuickGOQ8NF64
Ontology : AmiGOprotein binding  nucleus  nucleoplasm  mitochondrion  transcription, DNA-templated  zinc ion binding  ligand-dependent nuclear receptor transcription coactivator activity  nuclear replication fork  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIprotein binding  nucleus  nucleoplasm  mitochondrion  transcription, DNA-templated  zinc ion binding  ligand-dependent nuclear receptor transcription coactivator activity  nuclear replication fork  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkZMIZ2
Atlas of Cancer Signalling NetworkZMIZ2
Wikipedia pathwaysZMIZ2
Orthology - Evolution
OrthoDB83637
GeneTree (enSembl)ENSG00000122515
Phylogenetic Trees/Animal Genes : TreeFamZMIZ2
HOVERGENQ8NF64
HOGENOMQ8NF64
Homologs : HomoloGeneZMIZ2
Homology/Alignments : Family Browser (UCSC)ZMIZ2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMIZ2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMIZ2
dbVarZMIZ2
ClinVarZMIZ2
1000_GenomesZMIZ2 
Exome Variant ServerZMIZ2
ExAC (Exome Aggregation Consortium)ZMIZ2 (select the gene name)
Genetic variants : HAPMAP83637
Genomic Variants (DGV)ZMIZ2 [DGVbeta]
DECIPHERZMIZ2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMIZ2 
Mutations
ICGC Data PortalZMIZ2 
TCGA Data PortalZMIZ2 
Broad Tumor PortalZMIZ2
OASIS PortalZMIZ2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMIZ2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMIZ2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMIZ2
DgiDB (Drug Gene Interaction Database)ZMIZ2
DoCM (Curated mutations)ZMIZ2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMIZ2 (select a term)
intoGenZMIZ2
Cancer3DZMIZ2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611196   
Orphanet
MedgenZMIZ2
Genetic Testing Registry ZMIZ2
NextProtQ8NF64 [Medical]
TSGene83637
GENETestsZMIZ2
Target ValidationZMIZ2
Huge Navigator ZMIZ2 [HugePedia]
snp3D : Map Gene to Disease83637
BioCentury BCIQZMIZ2
ClinGenZMIZ2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83637
Chemical/Pharm GKB GenePA162409851
Clinical trialZMIZ2
Miscellaneous
canSAR (ICR)ZMIZ2 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMIZ2
EVEXZMIZ2
GoPubMedZMIZ2
iHOPZMIZ2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:49 CEST 2017

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