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ZMYM1 (zinc finger MYM-type containing 1)

Identity

Alias_nameszinc finger, MYM domain containing 1
Alias_symbol (synonym)FLJ23151
MYM
Other alias
HGNC (Hugo) ZMYM1
LocusID (NCBI) 79830
Atlas_Id 75974
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 35059786 and ends at 35115858 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYM1   26253
Cards
Entrez_Gene (NCBI)ZMYM1  79830  zinc finger MYM-type containing 1
AliasesMYM
GeneCards (Weizmann)ZMYM1
Ensembl hg19 (Hinxton)ENSG00000197056 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197056 [Gene_View]  chr1:35059786-35115858 [Contig_View]  ZMYM1 [Vega]
ICGC DataPortalENSG00000197056
TCGA cBioPortalZMYM1
AceView (NCBI)ZMYM1
Genatlas (Paris)ZMYM1
WikiGenes79830
SOURCE (Princeton)ZMYM1
Genetics Home Reference (NIH)ZMYM1
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYM1  -     chr1:35059786-35115858 +  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYM1  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblZMYM1 - 1p34.3 [CytoView hg19]  ZMYM1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIZMYM1 [Mapview hg19]  ZMYM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK026804 AK096206 AK125741 AK299779 AK308655
RefSeq transcript (Entrez)NM_001289088 NM_001289089 NM_001289090 NM_001289091 NM_001319955 NM_024772
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMYM1
Cluster EST : UnigeneHs.471243 [ NCBI ]
CGAP (NCI)Hs.471243
Alternative Splicing GalleryENSG00000197056
Gene ExpressionZMYM1 [ NCBI-GEO ]   ZMYM1 [ EBI - ARRAY_EXPRESS ]   ZMYM1 [ SEEK ]   ZMYM1 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79830
GTEX Portal (Tissue expression)ZMYM1
Human Protein AtlasENSG00000197056-ZMYM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SVZ6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SVZ6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SVZ6
Splice isoforms : SwissVarQ5SVZ6
PhosPhoSitePlusQ5SVZ6
Domains : Interpro (EBI)DUF4371    HATC_C_dom    RNaseH-like_dom    TRASH_dom    Znf_MYM   
Domain families : Pfam (Sanger)Dimer_Tnp_hAT (PF05699)    DUF4371 (PF14291)    zf-FCS (PF06467)   
Domain families : Pfam (NCBI)pfam05699    pfam14291    pfam06467   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)ZMYM1
DMDM Disease mutations79830
Blocks (Seattle)ZMYM1
SuperfamilyQ5SVZ6
Human Protein Atlas [tissue]ENSG00000197056-ZMYM1 [tissue]
Peptide AtlasQ5SVZ6
HPRD15739
IPIIPI00643628   IPI00470588   IPI00641649   
Protein Interaction databases
DIP (DOE-UCLA)Q5SVZ6
IntAct (EBI)Q5SVZ6
FunCoupENSG00000197056
BioGRIDZMYM1
STRING (EMBL)ZMYM1
ZODIACZMYM1
Ontologies - Pathways
QuickGOQ5SVZ6
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  zinc ion binding  protein dimerization activity  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  zinc ion binding  protein dimerization activity  
NDEx NetworkZMYM1
Atlas of Cancer Signalling NetworkZMYM1
Wikipedia pathwaysZMYM1
Orthology - Evolution
OrthoDB79830
GeneTree (enSembl)ENSG00000197056
Phylogenetic Trees/Animal Genes : TreeFamZMYM1
HOVERGENQ5SVZ6
HOGENOMQ5SVZ6
Homologs : HomoloGeneZMYM1
Homology/Alignments : Family Browser (UCSC)ZMYM1
Gene fusions - Rearrangements
Tumor Fusion PortalZMYM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYM1
dbVarZMYM1
ClinVarZMYM1
1000_GenomesZMYM1 
Exome Variant ServerZMYM1
ExAC (Exome Aggregation Consortium)ENSG00000197056
GNOMAD BrowserENSG00000197056
Genetic variants : HAPMAP79830
Genomic Variants (DGV)ZMYM1 [DGVbeta]
DECIPHERZMYM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMYM1 
Mutations
ICGC Data PortalZMYM1 
TCGA Data PortalZMYM1 
Broad Tumor PortalZMYM1
OASIS PortalZMYM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYM1
DgiDB (Drug Gene Interaction Database)ZMYM1
DoCM (Curated mutations)ZMYM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYM1 (select a term)
intoGenZMYM1
Cancer3DZMYM1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETZMYM1
MedgenZMYM1
Genetic Testing Registry ZMYM1
NextProtQ5SVZ6 [Medical]
TSGene79830
GENETestsZMYM1
Target ValidationZMYM1
Huge Navigator ZMYM1 [HugePedia]
snp3D : Map Gene to Disease79830
BioCentury BCIQZMYM1
ClinGenZMYM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79830
Chemical/Pharm GKB GenePA134948969
Clinical trialZMYM1
Miscellaneous
canSAR (ICR)ZMYM1 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYM1
EVEXZMYM1
GoPubMedZMYM1
iHOPZMYM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:22:31 CET 2017

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