Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ZMYM3 (zinc finger MYM-type containing 3)

Identity

Alias_namesZNF261
zinc finger protein 261
Alias_symbol (synonym)ZNF198L2
DXS6673E
KIAA0385
MYM
Other aliasXFIM
HGNC (Hugo) ZMYM3
LocusID (NCBI) 9203
Atlas_Id 75975
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 71239624 and ends at 71255197 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYM3   13054
Cards
Entrez_Gene (NCBI)ZMYM3  9203  zinc finger MYM-type containing 3
AliasesDXS6673E; MYM; XFIM; ZNF198L2; 
ZNF261
GeneCards (Weizmann)ZMYM3
Ensembl hg19 (Hinxton)ENSG00000147130 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147130 [Gene_View]  chrX:71239624-71255197 [Contig_View]  ZMYM3 [Vega]
ICGC DataPortalENSG00000147130
TCGA cBioPortalZMYM3
AceView (NCBI)ZMYM3
Genatlas (Paris)ZMYM3
WikiGenes9203
SOURCE (Princeton)ZMYM3
Genetics Home Reference (NIH)ZMYM3
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYM3  -     chrX:71239624-71255197 -  Xq13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYM3  -     Xq13.1   [Description]    (hg19-Feb_2009)
EnsemblZMYM3 - Xq13.1 [CytoView hg19]  ZMYM3 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIZMYM3 [Mapview hg19]  ZMYM3 [Mapview hg38]
OMIM300061   
Gene and transcription
Genbank (Entrez)AB002383 AK290762 AY927528 BC013009 BC069057
RefSeq transcript (Entrez)NM_001171162 NM_001171163 NM_005096 NM_201599
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMYM3
Cluster EST : UnigeneHs.522684 [ NCBI ]
CGAP (NCI)Hs.522684
Alternative Splicing GalleryENSG00000147130
Gene ExpressionZMYM3 [ NCBI-GEO ]   ZMYM3 [ EBI - ARRAY_EXPRESS ]   ZMYM3 [ SEEK ]   ZMYM3 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYM3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9203
GTEX Portal (Tissue expression)ZMYM3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14202   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14202  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14202
Splice isoforms : SwissVarQ14202
PhosPhoSitePlusQ14202
Domains : Interpro (EBI)DUF3504    TRASH_dom    Znf_MYM   
Domain families : Pfam (Sanger)DUF3504 (PF12012)    zf-FCS (PF06467)   
Domain families : Pfam (NCBI)pfam12012    pfam06467   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)ZMYM3
DMDM Disease mutations9203
Blocks (Seattle)ZMYM3
SuperfamilyQ14202
Human Protein AtlasENSG00000147130
Peptide AtlasQ14202
HPRD02088
IPIIPI00029484   IPI00219027   IPI00645504   IPI00642618   IPI00641109   IPI00643802   IPI00642326   
Protein Interaction databases
DIP (DOE-UCLA)Q14202
IntAct (EBI)Q14202
FunCoupENSG00000147130
BioGRIDZMYM3
STRING (EMBL)ZMYM3
ZODIACZMYM3
Ontologies - Pathways
QuickGOQ14202
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  zinc ion binding  regulation of cell morphogenesis  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  zinc ion binding  regulation of cell morphogenesis  
NDEx NetworkZMYM3
Atlas of Cancer Signalling NetworkZMYM3
Wikipedia pathwaysZMYM3
Orthology - Evolution
OrthoDB9203
GeneTree (enSembl)ENSG00000147130
Phylogenetic Trees/Animal Genes : TreeFamZMYM3
HOVERGENQ14202
HOGENOMQ14202
Homologs : HomoloGeneZMYM3
Homology/Alignments : Family Browser (UCSC)ZMYM3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYM3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYM3
dbVarZMYM3
ClinVarZMYM3
1000_GenomesZMYM3 
Exome Variant ServerZMYM3
ExAC (Exome Aggregation Consortium)ZMYM3 (select the gene name)
Genetic variants : HAPMAP9203
Genomic Variants (DGV)ZMYM3 [DGVbeta]
DECIPHERZMYM3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMYM3 
Mutations
ICGC Data PortalZMYM3 
TCGA Data PortalZMYM3 
Broad Tumor PortalZMYM3
OASIS PortalZMYM3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYM3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYM3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ZMYM3
DgiDB (Drug Gene Interaction Database)ZMYM3
DoCM (Curated mutations)ZMYM3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYM3 (select a term)
intoGenZMYM3
Cancer3DZMYM3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300061   
Orphanet
MedgenZMYM3
Genetic Testing Registry ZMYM3
NextProtQ14202 [Medical]
TSGene9203
GENETestsZMYM3
Target ValidationZMYM3
Huge Navigator ZMYM3 [HugePedia]
snp3D : Map Gene to Disease9203
BioCentury BCIQZMYM3
ClinGenZMYM3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9203
Chemical/Pharm GKB GenePA37632
Clinical trialZMYM3
Miscellaneous
canSAR (ICR)ZMYM3 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYM3
EVEXZMYM3
GoPubMedZMYM3
iHOPZMYM3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 31 15:49:50 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.