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ZMYM4 (zinc finger MYM-type containing 4)

Identity

Alias_namesZNF262
zinc finger protein 262
Alias_symbol (synonym)KIAA0425
ZNF198L3
MYM
Other aliasCDIR
HGNC (Hugo) ZMYM4
LocusID (NCBI) 9202
Atlas_Id 46884
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 35734568 and ends at 35887545 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GPATCH8 (17q21.31) / ZMYM4 (1p34.3)OSBPL8 (12q21.2) / ZMYM4 (1p34.3)RNGTT (6q15) / ZMYM4 (1p34.3)
RPRD1B (20q11.23) / ZMYM4 (1p34.3)ZMYM4 (1p34.3) / PSMB2 (1p34.3)ZMYM4 (1p34.3) / UTP11 (1p34.3)
GPATCH8 17q21.31 / ZMYM4 1p34.3ZMYM4 1p34.3 / UTP11L 1p34.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYM4   13055
Cards
Entrez_Gene (NCBI)ZMYM4  9202  zinc finger MYM-type containing 4
AliasesCDIR; MYM; ZNF198L3; ZNF262
GeneCards (Weizmann)ZMYM4
Ensembl hg19 (Hinxton)ENSG00000146463 [Gene_View]  chr1:35734568-35887545 [Contig_View]  ZMYM4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000146463 [Gene_View]  chr1:35734568-35887545 [Contig_View]  ZMYM4 [Vega]
ICGC DataPortalENSG00000146463
TCGA cBioPortalZMYM4
AceView (NCBI)ZMYM4
Genatlas (Paris)ZMYM4
WikiGenes9202
SOURCE (Princeton)ZMYM4
Genetics Home Reference (NIH)ZMYM4
Genomic and cartography
GoldenPath hg19 (UCSC)ZMYM4  -     chr1:35734568-35887545 +  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZMYM4  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblZMYM4 - 1p34.3 [CytoView hg19]  ZMYM4 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIZMYM4 [Mapview hg19]  ZMYM4 [Mapview hg38]
OMIM613568   
Gene and transcription
Genbank (Entrez)AB007885 AK308320 AK309705 BC012093 BC127113
RefSeq transcript (Entrez)NM_005095
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ZMYM4
Cluster EST : UnigeneHs.269211 [ NCBI ]
CGAP (NCI)Hs.269211
Alternative Splicing GalleryENSG00000146463
Gene ExpressionZMYM4 [ NCBI-GEO ]   ZMYM4 [ EBI - ARRAY_EXPRESS ]   ZMYM4 [ SEEK ]   ZMYM4 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYM4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9202
GTEX Portal (Tissue expression)ZMYM4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VZL5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VZL5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VZL5
Splice isoforms : SwissVarQ5VZL5
PhosPhoSitePlusQ5VZL5
Domains : Interpro (EBI)DUF3504    TRASH_dom    Znf_MYM   
Domain families : Pfam (Sanger)DUF3504 (PF12012)    zf-FCS (PF06467)   
Domain families : Pfam (NCBI)pfam12012    pfam06467   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)ZMYM4
DMDM Disease mutations9202
Blocks (Seattle)ZMYM4
SuperfamilyQ5VZL5
Human Protein AtlasENSG00000146463
Peptide AtlasQ5VZL5
HPRD10326
IPIIPI00477949   IPI00513965   IPI00856055   IPI00642195   
Protein Interaction databases
DIP (DOE-UCLA)Q5VZL5
IntAct (EBI)Q5VZL5
FunCoupENSG00000146463
BioGRIDZMYM4
STRING (EMBL)ZMYM4
ZODIACZMYM4
Ontologies - Pathways
QuickGOQ5VZL5
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  zinc ion binding  regulation of cell morphogenesis  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  protein binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  zinc ion binding  regulation of cell morphogenesis  
NDEx NetworkZMYM4
Atlas of Cancer Signalling NetworkZMYM4
Wikipedia pathwaysZMYM4
Orthology - Evolution
OrthoDB9202
GeneTree (enSembl)ENSG00000146463
Phylogenetic Trees/Animal Genes : TreeFamZMYM4
HOVERGENQ5VZL5
HOGENOMQ5VZL5
Homologs : HomoloGeneZMYM4
Homology/Alignments : Family Browser (UCSC)ZMYM4
Gene fusions - Rearrangements
Fusion : MitelmanGPATCH8/ZMYM4 [17q21.31/1p34.3]  [t(1;17)(p34;q21)]  
Fusion : MitelmanZMYM4/PSMB2 [1p34.3/1p34.3]  [t(1;1)(p34;p34)]  
Fusion : MitelmanZMYM4/UTP11L [1p34.3/1p34.3]  [t(1;1)(p34;p34)]  
Fusion: TCGAGPATCH8 17q21.31 ZMYM4 1p34.3 KIRC
Fusion: TCGAZMYM4 1p34.3 UTP11L 1p34.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYM4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYM4
dbVarZMYM4
ClinVarZMYM4
1000_GenomesZMYM4 
Exome Variant ServerZMYM4
ExAC (Exome Aggregation Consortium)ZMYM4 (select the gene name)
Genetic variants : HAPMAP9202
Genomic Variants (DGV)ZMYM4 [DGVbeta]
DECIPHER (Syndromes)1:35734568-35887545  ENSG00000146463
CONAN: Copy Number AnalysisZMYM4 
Mutations
ICGC Data PortalZMYM4 
TCGA Data PortalZMYM4 
Broad Tumor PortalZMYM4
OASIS PortalZMYM4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYM4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYM4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYM4
DgiDB (Drug Gene Interaction Database)ZMYM4
DoCM (Curated mutations)ZMYM4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYM4 (select a term)
intoGenZMYM4
Cancer3DZMYM4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613568   
Orphanet
MedgenZMYM4
Genetic Testing Registry ZMYM4
NextProtQ5VZL5 [Medical]
TSGene9202
GENETestsZMYM4
Huge Navigator ZMYM4 [HugePedia]
snp3D : Map Gene to Disease9202
BioCentury BCIQZMYM4
ClinGenZMYM4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9202
Chemical/Pharm GKB GenePA37633
Clinical trialZMYM4
Miscellaneous
canSAR (ICR)ZMYM4 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYM4
EVEXZMYM4
GoPubMedZMYM4
iHOPZMYM4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:25:37 CEST 2017

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