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ZMYM5 (zinc finger, MYM-type 5)

Identity

Alias_namesZNF237
zinc finger protein 237
Alias_symbol (synonym)ZNF198L1
MYM
Other aliasHSPC050
HGNC (Hugo) ZMYM5
LocusID (NCBI) 9205
Atlas_Id 75976
Location 13q12.11  [Link to chromosome band 13q12]
Location_base_pair Starts at 20411593 and ends at 20437776 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PSPC1 (13q12.11) / ZMYM5 (13q12.11)ZMYM5 (13q12.11) / IFT88 (13q12.11)ZMYM5 (13q12.11) / LNP1 (3q12.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYM5   13029
Cards
Entrez_Gene (NCBI)ZMYM5  9205  zinc finger, MYM-type 5
AliasesHSPC050; MYM; ZNF198L1; ZNF237
GeneCards (Weizmann)ZMYM5
Ensembl hg19 (Hinxton)ENSG00000132950 [Gene_View]  chr13:20411593-20437776 [Contig_View]  ZMYM5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132950 [Gene_View]  chr13:20411593-20437776 [Contig_View]  ZMYM5 [Vega]
ICGC DataPortalENSG00000132950
TCGA cBioPortalZMYM5
AceView (NCBI)ZMYM5
Genatlas (Paris)ZMYM5
WikiGenes9205
SOURCE (Princeton)ZMYM5
Genetics Home Reference (NIH)ZMYM5
Genomic and cartography
GoldenPath hg19 (UCSC)ZMYM5  -     chr13:20411593-20437776 -  13q12.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ZMYM5  -     13q12.11   [Description]    (hg38-Dec_2013)
EnsemblZMYM5 - 13q12.11 [CytoView hg19]  ZMYM5 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBIZMYM5 [Mapview hg19]  ZMYM5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF161535 AJ133352 AJ133353 AJ133354 AJ133355
RefSeq transcript (Entrez)NM_001039649 NM_001039650 NM_001142684 NM_014242
RefSeq genomic (Entrez)NC_000013 NC_018924 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)ZMYM5
Cluster EST : UnigeneHs.530988 [ NCBI ]
CGAP (NCI)Hs.530988
Alternative Splicing GalleryENSG00000132950
Gene ExpressionZMYM5 [ NCBI-GEO ]   ZMYM5 [ EBI - ARRAY_EXPRESS ]   ZMYM5 [ SEEK ]   ZMYM5 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYM5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9205
GTEX Portal (Tissue expression)ZMYM5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UJ78   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UJ78  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UJ78
Splice isoforms : SwissVarQ9UJ78
PhosPhoSitePlusQ9UJ78
Domains : Interpro (EBI)TRASH_dom    Znf_MYM    Znf_TTF   
Domain families : Pfam (Sanger)zf-FCS (PF06467)   
Domain families : Pfam (NCBI)pfam06467   
Domain families : Smart (EMBL)TRASH (SM00746)  ZnF_TTF (SM00597)  
Conserved Domain (NCBI)ZMYM5
DMDM Disease mutations9205
Blocks (Seattle)ZMYM5
PDB (SRS)2DAS   
PDB (PDBSum)2DAS   
PDB (IMB)2DAS   
PDB (RSDB)2DAS   
Structural Biology KnowledgeBase2DAS   
SCOP (Structural Classification of Proteins)2DAS   
CATH (Classification of proteins structures)2DAS   
SuperfamilyQ9UJ78
Human Protein AtlasENSG00000132950
Peptide AtlasQ9UJ78
IPIIPI00457202   IPI00457203   IPI00457204   IPI00900280   IPI00514597   
Protein Interaction databases
DIP (DOE-UCLA)Q9UJ78
IntAct (EBI)Q9UJ78
FunCoupENSG00000132950
BioGRIDZMYM5
STRING (EMBL)ZMYM5
ZODIACZMYM5
Ontologies - Pathways
QuickGOQ9UJ78
Ontology : AmiGOprotein binding  nucleus  zinc ion binding  
Ontology : EGO-EBIprotein binding  nucleus  zinc ion binding  
NDEx NetworkZMYM5
Atlas of Cancer Signalling NetworkZMYM5
Wikipedia pathwaysZMYM5
Orthology - Evolution
OrthoDB9205
GeneTree (enSembl)ENSG00000132950
Phylogenetic Trees/Animal Genes : TreeFamZMYM5
HOVERGENQ9UJ78
HOGENOMQ9UJ78
Homologs : HomoloGeneZMYM5
Homology/Alignments : Family Browser (UCSC)ZMYM5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYM5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYM5
dbVarZMYM5
ClinVarZMYM5
1000_GenomesZMYM5 
Exome Variant ServerZMYM5
ExAC (Exome Aggregation Consortium)ZMYM5 (select the gene name)
Genetic variants : HAPMAP9205
Genomic Variants (DGV)ZMYM5 [DGVbeta]
DECIPHER (Syndromes)13:20411593-20437776  ENSG00000132950
CONAN: Copy Number AnalysisZMYM5 
Mutations
ICGC Data PortalZMYM5 
TCGA Data PortalZMYM5 
Broad Tumor PortalZMYM5
OASIS PortalZMYM5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYM5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYM5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYM5
DgiDB (Drug Gene Interaction Database)ZMYM5
DoCM (Curated mutations)ZMYM5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYM5 (select a term)
intoGenZMYM5
Cancer3DZMYM5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZMYM5
Genetic Testing Registry ZMYM5
NextProtQ9UJ78 [Medical]
TSGene9205
GENETestsZMYM5
Huge Navigator ZMYM5 [HugePedia]
snp3D : Map Gene to Disease9205
BioCentury BCIQZMYM5
ClinGenZMYM5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9205
Chemical/Pharm GKB GenePA37607
Clinical trialZMYM5
Miscellaneous
canSAR (ICR)ZMYM5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYM5
EVEXZMYM5
GoPubMedZMYM5
iHOPZMYM5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:52:27 CET 2017

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