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ZMYM6 (zinc finger MYM-type containing 6)

Identity

Alias_namesZNF258
zinc finger protein 258
Alias_symbol (synonym)ZNF198L4
MYM
Buster2
ZBED7
Other alias
HGNC (Hugo) ZMYM6
LocusID (NCBI) 9204
Atlas_Id 75977
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 34986166 and ends at 35031968 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZMYM6 (1p34.3) / MIR548AE2 (16q12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYM6   13050
Cards
Entrez_Gene (NCBI)ZMYM6  9204  zinc finger MYM-type containing 6
AliasesBuster2; MYM; ZBED7; ZNF198L4; 
ZNF258
GeneCards (Weizmann)ZMYM6
Ensembl hg19 (Hinxton)ENSG00000163867 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163867 [Gene_View]  chr1:34986166-35031968 [Contig_View]  ZMYM6 [Vega]
ICGC DataPortalENSG00000163867
TCGA cBioPortalZMYM6
AceView (NCBI)ZMYM6
Genatlas (Paris)ZMYM6
WikiGenes9204
SOURCE (Princeton)ZMYM6
Genetics Home Reference (NIH)ZMYM6
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYM6  -     chr1:34986166-35031968 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYM6  -     1p34.3   [Description]    (hg19-Feb_2009)
EnsemblZMYM6 - 1p34.3 [CytoView hg19]  ZMYM6 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIZMYM6 [Mapview hg19]  ZMYM6 [Mapview hg38]
OMIM613567   
Gene and transcription
Genbank (Entrez)AB037774 AK000927 AK092067 AK299293 AK301461
RefSeq transcript (Entrez)NM_007167
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMYM6
Cluster EST : UnigeneHs.729053 [ NCBI ]
CGAP (NCI)Hs.729053
Alternative Splicing GalleryENSG00000163867
Gene ExpressionZMYM6 [ NCBI-GEO ]   ZMYM6 [ EBI - ARRAY_EXPRESS ]   ZMYM6 [ SEEK ]   ZMYM6 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYM6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9204
GTEX Portal (Tissue expression)ZMYM6
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95789   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO95789  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO95789
Splice isoforms : SwissVarO95789
PhosPhoSitePlusO95789
Domains : Interpro (EBI)DUF4371    RNaseH-like_dom    TRASH_dom    Znf_MYM   
Domain families : Pfam (Sanger)DUF4371 (PF14291)    zf-FCS (PF06467)   
Domain families : Pfam (NCBI)pfam14291    pfam06467   
Domain families : Smart (EMBL)TRASH (SM00746)  
Conserved Domain (NCBI)ZMYM6
DMDM Disease mutations9204
Blocks (Seattle)ZMYM6
SuperfamilyO95789
Human Protein AtlasENSG00000163867
Peptide AtlasO95789
HPRD10325
IPIIPI00827877   IPI00063918   IPI00026697   IPI00900323   IPI00903325   IPI00748944   IPI01014247   
Protein Interaction databases
DIP (DOE-UCLA)O95789
IntAct (EBI)O95789
FunCoupENSG00000163867
BioGRIDZMYM6
STRING (EMBL)ZMYM6
ZODIACZMYM6
Ontologies - Pathways
QuickGOO95789
Ontology : AmiGORNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  zinc ion binding  regulation of cell morphogenesis  
Ontology : EGO-EBIRNA polymerase II transcription factor activity, sequence-specific DNA binding  DNA binding  nucleoplasm  cytoplasm  regulation of transcription from RNA polymerase II promoter  cytoskeleton organization  multicellular organism development  zinc ion binding  regulation of cell morphogenesis  
NDEx NetworkZMYM6
Atlas of Cancer Signalling NetworkZMYM6
Wikipedia pathwaysZMYM6
Orthology - Evolution
OrthoDB9204
GeneTree (enSembl)ENSG00000163867
Phylogenetic Trees/Animal Genes : TreeFamZMYM6
HOVERGENO95789
HOGENOMO95789
Homologs : HomoloGeneZMYM6
Homology/Alignments : Family Browser (UCSC)ZMYM6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYM6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYM6
dbVarZMYM6
ClinVarZMYM6
1000_GenomesZMYM6 
Exome Variant ServerZMYM6
ExAC (Exome Aggregation Consortium)ZMYM6 (select the gene name)
Genetic variants : HAPMAP9204
Genomic Variants (DGV)ZMYM6 [DGVbeta]
DECIPHERZMYM6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMYM6 
Mutations
ICGC Data PortalZMYM6 
TCGA Data PortalZMYM6 
Broad Tumor PortalZMYM6
OASIS PortalZMYM6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYM6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYM6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYM6
DgiDB (Drug Gene Interaction Database)ZMYM6
DoCM (Curated mutations)ZMYM6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYM6 (select a term)
intoGenZMYM6
Cancer3DZMYM6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613567   
Orphanet
MedgenZMYM6
Genetic Testing Registry ZMYM6
NextProtO95789 [Medical]
TSGene9204
GENETestsZMYM6
Target ValidationZMYM6
Huge Navigator ZMYM6 [HugePedia]
snp3D : Map Gene to Disease9204
BioCentury BCIQZMYM6
ClinGenZMYM6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9204
Chemical/Pharm GKB GenePA37628
Clinical trialZMYM6
Miscellaneous
canSAR (ICR)ZMYM6 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYM6
EVEXZMYM6
GoPubMedZMYM6
iHOPZMYM6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:22 CEST 2017

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