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ZMYND12 (zinc finger MYND-type containing 12)

Identity

Alias_symbol (synonym)DKFZp434N2435
Other alias-
HGNC (Hugo) ZMYND12
LocusID (NCBI) 84217
Atlas_Id 75979
Location 1p34.2  [Link to chromosome band 1p34]
Location_base_pair Starts at 42430330 and ends at 42456267 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
HIVEP3 (1p34.2) / ZMYND12 (1p34.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYND12   21192
Cards
Entrez_Gene (NCBI)ZMYND12  84217  zinc finger MYND-type containing 12
Aliases
GeneCards (Weizmann)ZMYND12
Ensembl hg19 (Hinxton)ENSG00000066185 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000066185 [Gene_View]  chr1:42430330-42456267 [Contig_View]  ZMYND12 [Vega]
ICGC DataPortalENSG00000066185
TCGA cBioPortalZMYND12
AceView (NCBI)ZMYND12
Genatlas (Paris)ZMYND12
WikiGenes84217
SOURCE (Princeton)ZMYND12
Genetics Home Reference (NIH)ZMYND12
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYND12  -     chr1:42430330-42456267 -  1p34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYND12  -     1p34.2   [Description]    (hg19-Feb_2009)
EnsemblZMYND12 - 1p34.2 [CytoView hg19]  ZMYND12 - 1p34.2 [CytoView hg38]
Mapping of homologs : NCBIZMYND12 [Mapview hg19]  ZMYND12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK057384 AK301839 AL136858 BC024186 BQ441452
RefSeq transcript (Entrez)NM_001146192 NM_032257
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMYND12
Cluster EST : UnigeneHs.294009 [ NCBI ]
CGAP (NCI)Hs.294009
Alternative Splicing GalleryENSG00000066185
Gene ExpressionZMYND12 [ NCBI-GEO ]   ZMYND12 [ EBI - ARRAY_EXPRESS ]   ZMYND12 [ SEEK ]   ZMYND12 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYND12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84217
GTEX Portal (Tissue expression)ZMYND12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H0C1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H0C1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H0C1
Splice isoforms : SwissVarQ9H0C1
PhosPhoSitePlusQ9H0C1
Domaine pattern : Prosite (Expaxy)ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)TPR-like_helical_dom    Znf_MYND   
Domain families : Pfam (Sanger)zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam01753   
Conserved Domain (NCBI)ZMYND12
DMDM Disease mutations84217
Blocks (Seattle)ZMYND12
SuperfamilyQ9H0C1
Human Protein AtlasENSG00000066185
Peptide AtlasQ9H0C1
HPRD15740
IPIIPI00290938   IPI00908690   
Protein Interaction databases
DIP (DOE-UCLA)Q9H0C1
IntAct (EBI)Q9H0C1
FunCoupENSG00000066185
BioGRIDZMYND12
STRING (EMBL)ZMYND12
ZODIACZMYND12
Ontologies - Pathways
QuickGOQ9H0C1
Ontology : AmiGOintracellular  metal ion binding  
Ontology : EGO-EBIintracellular  metal ion binding  
NDEx NetworkZMYND12
Atlas of Cancer Signalling NetworkZMYND12
Wikipedia pathwaysZMYND12
Orthology - Evolution
OrthoDB84217
GeneTree (enSembl)ENSG00000066185
Phylogenetic Trees/Animal Genes : TreeFamZMYND12
HOVERGENQ9H0C1
HOGENOMQ9H0C1
Homologs : HomoloGeneZMYND12
Homology/Alignments : Family Browser (UCSC)ZMYND12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYND12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYND12
dbVarZMYND12
ClinVarZMYND12
1000_GenomesZMYND12 
Exome Variant ServerZMYND12
ExAC (Exome Aggregation Consortium)ZMYND12 (select the gene name)
Genetic variants : HAPMAP84217
Genomic Variants (DGV)ZMYND12 [DGVbeta]
DECIPHERZMYND12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMYND12 
Mutations
ICGC Data PortalZMYND12 
TCGA Data PortalZMYND12 
Broad Tumor PortalZMYND12
OASIS PortalZMYND12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYND12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYND12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYND12
DgiDB (Drug Gene Interaction Database)ZMYND12
DoCM (Curated mutations)ZMYND12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYND12 (select a term)
intoGenZMYND12
Cancer3DZMYND12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenZMYND12
Genetic Testing Registry ZMYND12
NextProtQ9H0C1 [Medical]
TSGene84217
GENETestsZMYND12
Target ValidationZMYND12
Huge Navigator ZMYND12 [HugePedia]
snp3D : Map Gene to Disease84217
BioCentury BCIQZMYND12
ClinGenZMYND12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84217
Chemical/Pharm GKB GenePA134993145
Clinical trialZMYND12
Miscellaneous
canSAR (ICR)ZMYND12 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYND12
EVEXZMYND12
GoPubMedZMYND12
iHOPZMYND12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:51 CEST 2017

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