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ZMYND15 (zinc finger MYND-type containing 15)

Identity

Alias_symbol (synonym)DKFZp434N127
Other aliasSPGF14
HGNC (Hugo) ZMYND15
LocusID (NCBI) 84225
Atlas_Id 75980
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4740015 and ends at 4746119 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZMYND15 (17p13.2) / ZMYND15 (17p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYND15   20997
Cards
Entrez_Gene (NCBI)ZMYND15  84225  zinc finger MYND-type containing 15
AliasesSPGF14
GeneCards (Weizmann)ZMYND15
Ensembl hg19 (Hinxton)ENSG00000141497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141497 [Gene_View]  chr17:4740015-4746119 [Contig_View]  ZMYND15 [Vega]
ICGC DataPortalENSG00000141497
TCGA cBioPortalZMYND15
AceView (NCBI)ZMYND15
Genatlas (Paris)ZMYND15
WikiGenes84225
SOURCE (Princeton)ZMYND15
Genetics Home Reference (NIH)ZMYND15
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYND15  -     chr17:4740015-4746119 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYND15  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblZMYND15 - 17p13.2 [CytoView hg19]  ZMYND15 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIZMYND15 [Mapview hg19]  ZMYND15 [Mapview hg38]
OMIM614312   615842   
Gene and transcription
Genbank (Entrez)AA937353 AK302181 AK310469 AL136893 BC067296
RefSeq transcript (Entrez)NM_001136046 NM_001267822 NM_032265
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMYND15
Cluster EST : UnigeneHs.742549 [ NCBI ]
CGAP (NCI)Hs.742549
Alternative Splicing GalleryENSG00000141497
Gene ExpressionZMYND15 [ NCBI-GEO ]   ZMYND15 [ EBI - ARRAY_EXPRESS ]   ZMYND15 [ SEEK ]   ZMYND15 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYND15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84225
GTEX Portal (Tissue expression)ZMYND15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H091   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H091  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H091
Splice isoforms : SwissVarQ9H091
PhosPhoSitePlusQ9H091
Domaine pattern : Prosite (Expaxy)ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)Znf_MYND   
Domain families : Pfam (Sanger)zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam01753   
Conserved Domain (NCBI)ZMYND15
DMDM Disease mutations84225
Blocks (Seattle)ZMYND15
SuperfamilyQ9H091
Human Protein AtlasENSG00000141497
Peptide AtlasQ9H091
HPRD15741
IPIIPI00031056   IPI00910885   
Protein Interaction databases
DIP (DOE-UCLA)Q9H091
IntAct (EBI)Q9H091
FunCoupENSG00000141497
BioGRIDZMYND15
STRING (EMBL)ZMYND15
ZODIACZMYND15
Ontologies - Pathways
QuickGOQ9H091
Ontology : AmiGOnucleus  cytoplasm  transcription, DNA-templated  spermatid development  histone deacetylase binding  negative regulation of transcription, DNA-templated  metal ion binding  
Ontology : EGO-EBInucleus  cytoplasm  transcription, DNA-templated  spermatid development  histone deacetylase binding  negative regulation of transcription, DNA-templated  metal ion binding  
NDEx NetworkZMYND15
Atlas of Cancer Signalling NetworkZMYND15
Wikipedia pathwaysZMYND15
Orthology - Evolution
OrthoDB84225
GeneTree (enSembl)ENSG00000141497
Phylogenetic Trees/Animal Genes : TreeFamZMYND15
HOVERGENQ9H091
HOGENOMQ9H091
Homologs : HomoloGeneZMYND15
Homology/Alignments : Family Browser (UCSC)ZMYND15
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYND15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYND15
dbVarZMYND15
ClinVarZMYND15
1000_GenomesZMYND15 
Exome Variant ServerZMYND15
ExAC (Exome Aggregation Consortium)ZMYND15 (select the gene name)
Genetic variants : HAPMAP84225
Genomic Variants (DGV)ZMYND15 [DGVbeta]
DECIPHERZMYND15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMYND15 
Mutations
ICGC Data PortalZMYND15 
TCGA Data PortalZMYND15 
Broad Tumor PortalZMYND15
OASIS PortalZMYND15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYND15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYND15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYND15
DgiDB (Drug Gene Interaction Database)ZMYND15
DoCM (Curated mutations)ZMYND15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYND15 (select a term)
intoGenZMYND15
Cancer3DZMYND15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614312    615842   
Orphanet22774   
MedgenZMYND15
Genetic Testing Registry ZMYND15
NextProtQ9H091 [Medical]
TSGene84225
GENETestsZMYND15
Target ValidationZMYND15
Huge Navigator ZMYND15 [HugePedia]
snp3D : Map Gene to Disease84225
BioCentury BCIQZMYND15
ClinGenZMYND15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84225
Chemical/Pharm GKB GenePA134873463
Clinical trialZMYND15
Miscellaneous
canSAR (ICR)ZMYND15 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYND15
EVEXZMYND15
GoPubMedZMYND15
iHOPZMYND15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:44:23 CEST 2017

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