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ZMYND19 (zinc finger MYND-type containing 19)

Identity

Alias_symbol (synonym)MIZIP
Other alias
HGNC (Hugo) ZMYND19
LocusID (NCBI) 116225
Atlas_Id 75981
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137582079 and ends at 137590485 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ZMYND19 (9q34.3) / ARRDC1 (9q34.3)ZMYND19 (9q34.3) / PXN (12q24.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ZMYND19   21146
Cards
Entrez_Gene (NCBI)ZMYND19  116225  zinc finger MYND-type containing 19
AliasesMIZIP
GeneCards (Weizmann)ZMYND19
Ensembl hg19 (Hinxton)ENSG00000165724 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165724 [Gene_View]  chr9:137582079-137590485 [Contig_View]  ZMYND19 [Vega]
ICGC DataPortalENSG00000165724
TCGA cBioPortalZMYND19
AceView (NCBI)ZMYND19
Genatlas (Paris)ZMYND19
WikiGenes116225
SOURCE (Princeton)ZMYND19
Genetics Home Reference (NIH)ZMYND19
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYND19  -     chr9:137582079-137590485 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYND19  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblZMYND19 - 9q34.3 [CytoView hg19]  ZMYND19 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIZMYND19 [Mapview hg19]  ZMYND19 [Mapview hg38]
OMIM611424   
Gene and transcription
Genbank (Entrez)AJ298882 AX766496 BC012948 BU147462 DQ894648
RefSeq transcript (Entrez)NM_138462
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ZMYND19
Cluster EST : UnigeneHs.128096 [ NCBI ]
CGAP (NCI)Hs.128096
Alternative Splicing GalleryENSG00000165724
Gene ExpressionZMYND19 [ NCBI-GEO ]   ZMYND19 [ EBI - ARRAY_EXPRESS ]   ZMYND19 [ SEEK ]   ZMYND19 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYND19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116225
GTEX Portal (Tissue expression)ZMYND19
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96E35   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96E35  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96E35
Splice isoforms : SwissVarQ96E35
PhosPhoSitePlusQ96E35
Domaine pattern : Prosite (Expaxy)ZF_MYND_1 (PS01360)    ZF_MYND_2 (PS50865)   
Domains : Interpro (EBI)HNH_nuc    ZMYND19    Znf_MYND   
Domain families : Pfam (Sanger)HNH_3 (PF13392)    zf-MYND (PF01753)   
Domain families : Pfam (NCBI)pfam13392    pfam01753   
Conserved Domain (NCBI)ZMYND19
DMDM Disease mutations116225
Blocks (Seattle)ZMYND19
SuperfamilyQ96E35
Human Protein AtlasENSG00000165724
Peptide AtlasQ96E35
HPRD15743
IPIIPI00061171   
Protein Interaction databases
DIP (DOE-UCLA)Q96E35
IntAct (EBI)Q96E35
FunCoupENSG00000165724
BioGRIDZMYND19
STRING (EMBL)ZMYND19
ZODIACZMYND19
Ontologies - Pathways
QuickGOQ96E35
Ontology : AmiGOprotein binding  cytoplasm  plasma membrane  synapse  metal ion binding  
Ontology : EGO-EBIprotein binding  cytoplasm  plasma membrane  synapse  metal ion binding  
NDEx NetworkZMYND19
Atlas of Cancer Signalling NetworkZMYND19
Wikipedia pathwaysZMYND19
Orthology - Evolution
OrthoDB116225
GeneTree (enSembl)ENSG00000165724
Phylogenetic Trees/Animal Genes : TreeFamZMYND19
HOVERGENQ96E35
HOGENOMQ96E35
Homologs : HomoloGeneZMYND19
Homology/Alignments : Family Browser (UCSC)ZMYND19
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerZMYND19 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ZMYND19
dbVarZMYND19
ClinVarZMYND19
1000_GenomesZMYND19 
Exome Variant ServerZMYND19
ExAC (Exome Aggregation Consortium)ZMYND19 (select the gene name)
Genetic variants : HAPMAP116225
Genomic Variants (DGV)ZMYND19 [DGVbeta]
DECIPHERZMYND19 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisZMYND19 
Mutations
ICGC Data PortalZMYND19 
TCGA Data PortalZMYND19 
Broad Tumor PortalZMYND19
OASIS PortalZMYND19 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICZMYND19  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDZMYND19
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ZMYND19
DgiDB (Drug Gene Interaction Database)ZMYND19
DoCM (Curated mutations)ZMYND19 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ZMYND19 (select a term)
intoGenZMYND19
Cancer3DZMYND19(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611424   
Orphanet
MedgenZMYND19
Genetic Testing Registry ZMYND19
NextProtQ96E35 [Medical]
TSGene116225
GENETestsZMYND19
Target ValidationZMYND19
Huge Navigator ZMYND19 [HugePedia]
snp3D : Map Gene to Disease116225
BioCentury BCIQZMYND19
ClinGenZMYND19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116225
Chemical/Pharm GKB GenePA134878875
Clinical trialZMYND19
Miscellaneous
canSAR (ICR)ZMYND19 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineZMYND19
EVEXZMYND19
GoPubMedZMYND19
iHOPZMYND19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed May 31 15:49:51 CEST 2017

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