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ZMYND8 (zinc finger MYND-type containing 8)

Identity

Alias (NCBI)PRKCBP1
PRO2893
RACK7
HGNC (Hugo) ZMYND8
HGNC Alias symbRACK7
HGNC Previous namePRKCBP1
HGNC Previous nameprotein kinase C binding protein 1
LocusID (NCBI) 23613
Atlas_Id 41853
Location 20q13.12  [Link to chromosome band 20q13]
Location_base_pair Starts at 47209214 and ends at 47356699 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BCAS4 (20q13.13) / ZMYND8 (20q13.12)NCOA3 (20q13.12) / ZMYND8 (20q13.12)SLC2A10 (20q13.12) / ZMYND8 (20q13.12)
SYCP2 (20q13.33) / ZMYND8 (20q13.12)TAF8 (6p21.1) / ZMYND8 (20q13.12)ZMYND8 (20q13.12) / CELF5 (19p13.3)
ZMYND8 (20q13.12) / CEP250 (20q11.22)ZMYND8 (20q13.12) / EYA2 (20q13.12)ZMYND8 (20q13.12) / GTPBP1 (22q13.1)
ZMYND8 (20q13.12) / IARS (9q22.31)ZMYND8 (20q13.12) / MN1 (22q12.1)ZMYND8 (20q13.12) / PITPNB (22q12.1)
ZMYND8 (20q13.12) / RELA (11q13.1)ZMYND8 (20q13.12) / SLC39A14 (8p21.3)ZMYND8 (20q13.12) / SULF2 (20q13.12)
ZMYND8 (20q13.12) / TYRP1 (9p23)ZMYND8 (20q13.12) / ZC4H2 (Xq11.2)ZMYND8 (20q13.12) / ZMYND8 (20q13.12)
SYCP2 20q13.33 / ZMYND8 20q13.12ZMYND8 20q13.12 / CELF5 19p13.3ZMYND8 20q13.12 / EYA2 20q13.12
ZMYND8 20q13.12 / GTPBP1 22q13.1ZMYND8 20q13.12 / MN1 22q12.1ZMYND8 20q13.12 / PITPNB 22q12.1
ZMYND8 20q13.12 / SULF2 20q13.12ZMYND8 20q13.12 / ZC4H2 Xq11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(5;20)(q32;q13) ZMYND8/PDGFRB
t(11;20)(q13;q13) ZMYND8/RELA


External links

Nomenclature
HGNC (Hugo)ZMYND8   9397
Cards
Entrez_Gene (NCBI)ZMYND8    zinc finger MYND-type containing 8
AliasesPRKCBP1; PRO2893; RACK7
GeneCards (Weizmann)ZMYND8
Ensembl hg19 (Hinxton)ENSG00000101040 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101040 [Gene_View]  ENSG00000101040 [Sequence]  chr20:47209214-47356699 [Contig_View]  ZMYND8 [Vega]
ICGC DataPortalENSG00000101040
TCGA cBioPortalZMYND8
AceView (NCBI)ZMYND8
Genatlas (Paris)ZMYND8
SOURCE (Princeton)ZMYND8
Genetics Home Reference (NIH)ZMYND8
Genomic and cartography
GoldenPath hg38 (UCSC)ZMYND8  -     chr20:47209214-47356699 -  20q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ZMYND8  -     20q13.12   [Description]    (hg19-Feb_2009)
GoldenPathZMYND8 - 20q13.12 [CytoView hg19]  ZMYND8 - 20q13.12 [CytoView hg38]
ImmunoBaseENSG00000101040
Genome Data Viewer NCBIZMYND8 [Mapview hg19]  
OMIM615713   
Gene and transcription
Genbank (Entrez)AB032951 AF144233 AF233453 AF273045 AF454056
RefSeq transcript (Entrez)NM_001281769 NM_001281771 NM_001281772 NM_001281773 NM_001281774 NM_001281775 NM_001281776 NM_001281777 NM_001281778 NM_001281779 NM_001281780 NM_001281781 NM_001281782 NM_001281783 NM_001281784 NM_001363714 NM_001363741 NM_012408 NM_183047 NM_183048
Consensus coding sequences : CCDS (NCBI)ZMYND8
Gene ExpressionZMYND8 [ NCBI-GEO ]   ZMYND8 [ EBI - ARRAY_EXPRESS ]   ZMYND8 [ SEEK ]   ZMYND8 [ MEM ]
Gene Expression Viewer (FireBrowse)ZMYND8 [ Firebrowse - Broad ]
GenevisibleExpression of ZMYND8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23613
GTEX Portal (Tissue expression)ZMYND8
Human Protein AtlasENSG00000101040-ZMYND8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ZMYND8
Human Protein Atlas [tissue]ENSG00000101040-ZMYND8 [tissue]
HPRD10166
Protein Interaction databases
BioGRIDZMYND8
STRING (EMBL)ZMYND8
ZODIACZMYND8
Ontologies - Pathways
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXZMYND8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:39:05 CEST 2021

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